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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1026 aa] | Spike glycoprotein :SPIKE_CVHSA | |
2 | b | T 1 (T) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 119N (identity: 100.0 %/92.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6nb6_B_1 identity=92.2% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :**** ************************************************ ****************************************: 6nb6_B_1 37:RCTTXXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136 SecStr : ------- EEEE TEEEEE SS SEEEEEEEEE TT EEEEEEEETTEE EEE TTEEEEEEEESS EEEEEEESSSSTTS EEEEE: ExpBur :eeee-------eeeebebbebbbbeeeeeebeeeeeeeebebbebebebebbeeeeeeebeeeeebeebbbebbbbeeebebebeebeeeeeeeebeeee: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :******************** ********************** ****************************************: 6nb6_B_1 137:NNSTNVVIRACNFELCDNPFXXXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236 SecStr :E SSSEEEEEEEEEE SS ---------- SEEEEEEEEEEEE -------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEE: ExpBur :eeeebeeebbbbbbebeeee----------eeebeeeeeeeeebeeeeeeee--------ebebeebbbebebeeeeeebeeeeebebeeeeeeeeebbe: Contact : b queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :******************* *********************************************************************: 6nb6_B_1 237:PIFKLPLGINITNFRAILTXXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336 SecStr :EEEEE SEEEEEE ------------ EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEE : ExpBur :eeeeeebeeeeebbbebee------------eeebbebebbebebbbebeeebebebbbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbee: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 6nb6_B_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436 SecStr :S B HHHHT S BSTT EEEEE SEE HHHHT SS SEEEEESS GGGGGG BS EEEEEEEEEGGGGGGSSBT SHHHHHT B SS E: ExpBur :eeeeebeeeeeeeeeebebbbebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebebebeeebbbeeeeeebeeeeeeeebbebbbbeeeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************** *********** *********: 6nb6_B_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFXXXXXXXXQPYRVVVLSFEXXXXXXTVCGPKLST: 536 SecStr :EEEEEEE TTTT TT TT EEE SS TT B TTS TTSTT B SEEE -------- EEEEEEEEE ------ EE : ExpBur :beeebbebeeebeeeeebeebebbeeeeeebeeeeeeeeeeebeeeeeeeeeeeeebeebeeebeb--------ebbbebeeeee------ebeeeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 6nb6_B_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636 SecStr : TTSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEEETS HHHHHHHHHTT EES: ExpBur :eeeeeebbebebeebeeebbbeeeeeebeeeeeeeeeeeeeeebbebeeeebbbbbeebeebbbbbbbbbeeeeebebbbbeebebeebeebeeeeebee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** ***********************************************: 6nb6_B_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736 SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEE EEEEEEEEEEE EEE: ExpBur :ebeeeeeeeeeeebeebbbbebeebeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************* : 6nb6_B_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836 SecStr :E HHHHH SS HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SS S BTTB TTTSB TTSS SBHHHHHHTT ---------: ExpBur :bebeebbbeebeebeebbeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeebebbebeebbbeeeeeeeebebbbbbbeee---------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 : ***********************************************************************************: 6nb6_B_1 837:XXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936 SecStr :----------------- TT EEEE SS HHHHHHHHHHHHHHHHHSGGGTTTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHH: ExpBur :-----------------eeebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6nb6_B_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036 SecStr :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S THHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeeeeeebeebeebeeebeebeeebeeebeeeeebeeeebebbeeeeeeeebbebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6nb6_B_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136 SecStr : STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EEETTEEEEESSSEEEEETTEEEEE TTS B BGGGEEEEEETTS TT EE : ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbeebbeeeebbeeebeeeeeeeebeeeeee: queryA 1118:TVYDPLQPEL:1127 :**********: 6nb6_B_1 1137:TVYDPLQPEL:1146 SecStr : B THHHH : ExpBur :ebeeeeeeee: |