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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [931 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | Q 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 1056N (identity: 100.0 %/85.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h13_B_1 identity=85.0% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** ********* ********** ************** : 8h13_B_1 17:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXXXXXXXKDGIYFAATXXXXVVRGWVFGSTXXXXXQSVIIINNSTNVVIXXXXX: 116 SecStr : EEEE S EE SS SS EEE SEE TTEEEEEE ------------- EEEEE ---- EEEEEES ----- EEEEE SS EE -----: ExpBur :eeeebbebbbbbbeeeebeeeeeebeebbbbbebebebee-------------eeebbbbbe----eebbbeeeee-----eeeebeeeeeeeeb-----: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 : ****** ********************************************* : 8h13_B_1 117:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLXXXXXX: 216 SecStr :------------------------------ EE ------------- EEEEEEEEEETTEEEEEE EE SS EEEEEEEE ------: ExpBur :------------------------------eeeeee-------------eebebbbbbeeeeebebbebeeeeeeeeeeeeeeebbeeeeebee------: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :******* **********************************************************************************: 8h13_B_1 217:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 316 SecStr : EE ----------- EEEEE EE EEE TT S EE SSS HHHHHHHHHTSS SEEEEEEEEEB S EEE HHHHS: ExpBur :eebeeee-----------eebbbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeebeeebeebebeeeeebbbbeeeeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :************************* ************************************ **************************** : 8h13_B_1 317:ATKFPSVYAWERKKISNCVADYSVLXXXXXXXXFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPCQTGVIADYNYKLPDDFMGCVLAWNTRNIXX: 416 SecStr : S SSS EEEE SEE TT -------- EESSS SGGGGTS BS EEEE EE SGGGGG STT HHHHHH SS SEEEEEE --: ExpBur :eeebebbeebeeeebeebbbebeee--------eeeeebeeeebeeebbeebebbbbbbebebeebbbeeeebeebeeebebbeebebbbbeeebeee--: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 : ******************* ************************* **************************: 8h13_B_1 417:XXXXNYNYKYRYLRHGKLRPFERXXXXXXXXXXXXXXXXXXXXXXXPLNDYGFYTTTGIGYQPYRVVVLSFXXXNAPATVCGPKLSTDLIKNQCVNFNFN: 516 SecStr :---- TT EEE SS SS ----------------------- EEE STTS S S EEEEEEE --- EE SS EEEEET: ExpBur :----eeebebeeeeeeebeeeee-----------------------eeeebebeeeeeeeebbebbbbbeb---eeeeebbbeeeeeebeeeebbebbbe: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h13_B_1 517:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 616 SecStr :TEEEEEEEE TT EEE SSS EEEEE TTT EEEEE SEEEEEEEES TTT S EEEEES THHHHHHHHTT BSS SS S EEE: ExpBur :eeeeebbbeeeeeeeeeeeeebeeeeeeeebbebeeeeeebbbeebbebbbbbbbbbbeeeeebbbbbeebebeebeebeeeeebeeebeebeeeeeebe: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h13_B_1 617:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 716 SecStr : SSEEEES EE S B SEEEETTEEEE -------- EEEEB S TTEEEEEEEEEEEEEEEEEE EE HHHHHS S HH: ExpBur :beebbbbbbeebeeeeeeebebeeebbbbeee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeeeeb: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :****************************************************************************** : 8h13_B_1 717:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXX: 816 SecStr :HHHHHHHSTT HHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SSSSS HHHHHHHTT ----------------------: ExpBur :beebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeeeeeeebebbebeebbbeeeeeeebbebbbbbeeee----------------------: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 : ***********************************************************************************************: 8h13_B_1 817:XXXXXKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 916 SecStr :----- TT EE SS HHHHHHHHHHHHHHHHHHTT SSSSS HHHHHHHHHHHHT HHHHHHSHHHHHHHHHHHHHHHHHHHHH S S HHH: ExpBur :-----eebeeeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeebeeebbeebeebbeebbeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************** *************************************************************: 8h13_B_1 917:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1016 SecStr :HHHHHHHHHHHHHHHHHTT TTSS S HHHHHTTS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbebbeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h13_B_1 1017:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1109 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEESEEESSS EEEESSSEEE TTSS EEE SSS B BSTTEEE S TTSSTTEEE B : ExpBur :bbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbeeeeebbbbbebbbbeeebbeeebeeeeeeeeeeebeeeebeeee: Contact : b |