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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (A) | polymer(polypeptide(L)) [979 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | Q 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 32Q 65N (identity: 100.0 %/89.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h11_B_1 identity=89.4% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** *****************************************************: 8h11_B_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEEETT EE SS S EEEEEEEE TTEEEEEE ------- EE SS EEEEEEESS EEEEEE SSSSTTS EEEEEE SS EEEEEEEE: ExpBur :eeeebbebbbbbbeeeebeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeebbbbebeeeeeeebbebbbb: Contact : b b queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :** ************ ************************ ***********************: 8h11_B_1 121:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIXXXXDLPSGFNTLKPIFKLPLGINITN: 220 SecStr : ---------------------- EEEEEEEEEE ------------- EEEEEEEEEETTEEEEEEEEE ---- EEEEEEEE E: ExpBur :ee----------------------eeeeeeeeeeee-------------ebbebbbbbeeeeebbbbebeeee----ebeeeebbbeeeeebebebebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :****** *********************************************************************************: 8h11_B_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEE ------------- EEEEE EEEEEEEEE SSSSEEEEEETTS HHHHHHHHHT S SEEEEEEEEEB EEEE B SHHHHS: ExpBur :bebeee-------------ebbbbbbbeebebbbebeeeeebeebbbbebebbbbbbbeeeebebeebeeebeebebeeeeebbbbeeeeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*************************************** *********************************************************** : 8h11_B_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDX: 420 SecStr : S SSS EEEEE SEE HHHHT S SEEEEESS GGGGGT BS EEEEEEEE STTGGGSSTT SHHHHHT TT EEEEEEE TT -: ExpBur :eeebbbbeebeeeebeebebebbebeeeeebeeeebeebeeeebbeebbbbbebbbbbbbbebeebbbeeeeeebbbebbbbbeebebbbbbbebeeee-: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 : ************************** ********** *****************************************: 8h11_B_1 421:XXXXXXXYKYRYLRHGKLRPFERDISNVPFSPDXXXXXXXXXXCYWPLNDYGFXXXXXXGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr :------- EEE SS TT ---------- EEE ------ EEEEEEEE SSSS EE S SSEEEEEET: ExpBur :-------eebbeeeeeebeeeeebeeeeebeee----------eeebbeebee------eeeebbbbbbbbeeeeeebbbbbeeeeeeeeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h11_B_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620 SecStr :TEEEEEEEEE TT EEE TTS EEEEE TTT EEEEE EEEEEEEES TTT S EEEEET HHHHHHHHHTT BSS SS TT EEE: ExpBur :eeeeebebeeeeeebeeeebebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeeeeeebbbbeebebeebbebbeeeebebebeeeebeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h11_B_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SSEEEES EE S SEEEETTEEEEEE -------- EEEEEE S SSEEEEEEEEEEEEEEEEEE EEEE HHHHHTTT HH: ExpBur :bebbbbbebeeeeeeeeeebebeeebbbbbee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :******************************************************************************** : 8h11_B_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXXXXXXXXXXXXXXX: 820 SecStr :HHHHHGGG SSHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE GGGS TTSSSSS HHHHHHHHH --------------------: ExpBur :beebbeeeeeebeebeeebeebbebbbebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeebbebbbbbbeebee--------------------: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 : *************************************************************************************************: 8h11_B_1 821:XXXAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr :--- TT EEEE SS HHHHHHHHHHHHHHHHHHTT SSSSS HHHHHHHHHHHTT HHHHHHSHHHHHHHHHHHHHHHHHHHHS STTHHH: ExpBur :---eeeebbeeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebbeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************ ***************************************************************: 8h11_B_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebbeebeebeeebeeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbeebeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h11_B_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSSEEEESSSEEEE SS EEEE SSS B BSTTEEE S TTSSTT EE B : ExpBur :bbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeebeeeeeeeeeebeeee: |