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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1076 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | O 1 (O) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 269N (identity: 100.0 %/96.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6cs2_B_1 identity=96.7% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6cs2_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : SS B EEEE TT B SS SEEEEEEEEE TT EEEEEEE TTB EE TT EEEEEEESS EEEEESSSSTTS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbeeeeeeeeeebeebeeebbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6cs2_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEEEEEEEEEEEEEETTT SEEEEEEEEEEEEEEEEEE S SS EEEEEEEEEETTEEEEEEEEEE SSS BE: ExpBur :bebeeebbebbbbebbebbbbbbbeeebeeeeebbeeebeeeeeeeebeeeebebeeeeeebebbebbbbbeeeeebbbbebeeebeeeeebeeeebbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6cs2_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE EEEEEEEEEE --- SEEEEEEE EEEEEEEEE TTS EEE BSSS HHHHHHHHHTSS SEEEEEEEEEE EEE : ExpBur :eeeebebebebeebbbbbbbbbe---ebbbbebbbbbbebeebebbbebeeeeebeebbbbebebbbebebeeeeeebeebeeebeebebeeeeebebee: Contact : b queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6cs2_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :S S TTTSS S STT EEE S B HHHHS TT S EE --- THHHH S EEEEEEEEETTGGGGSSSS SHHHHHT B SSS : ExpBur :eeeeebebeebeeeeebebbbbbeebebeebebebeebeeeeeeebeeee---eebbeebeeebbbbbbbbbebebeeebbeeeebebbbebbbbbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6cs2_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEEE HHHH SS B EEE SS BT B TTSS TTSTT B SEEE B TTS GGGSEEEEEEEEE ------ B B : ExpBur :bbbbbeebeeebbeeeebeebeebeeeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebebeeeeeebebbbbbbbbbbe------ebeeeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6cs2_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEEEE SS EEEEE TT B SSSSB EEE TTT EEEEE EEEEEEEES TTT EEEEET HHHHHHHHHTT EES: ExpBur :eeeeeebbebebeebeeebbbeeeeeebeeeeeeeeeeeeeeebbebeeeeeebebeebbebbbbbbbbbeeebeeebbbbeeeebeebeebbeeeebee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** ***********************************************: 6cs2_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS S EE SSEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE TTEEEEEEEEEEEEEEEEEE EE: ExpBur :ebeeeebeeeeeebeebbbbebeeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebeeebebebeebbbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6cs2_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E SHHHHTSS HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHSTT SS S EETTEE TTTS SSS SS HHHHHHHHH --------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeeeeeeeeeeeebeeebbebebbbbeeeeeeeebebbebbbebbe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****** ***************************************************************************************: 6cs2_B_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : BEE ------- EE SSSEEE SS HHHHHHHHHHHHHHHTTTSHHHHSSS HHHHHHHHHHHTT THHHHTSHHHHHHHHHHHHHHHH: ExpBur :eebeee-------eeeeeeebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeeee: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6cs2_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHH STTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS: ExpBur :eeeeeeeeebeebeebeebbeebbeebeeeeeeeeebeeeebeebeeeeeeeebeeebeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6cs2_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : TBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE SEEEETTEEEEESSSEEEE SSSEEEE SSS B BSSSEEEEEESSSSSSEEE : ExpBur :bbeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeeebbeeeeebebbeeebbeeeebbeebbeeeeebeeeeeeeee: queryA 1118:TVYDPLQPEL:1127 :**********: 6cs2_B_1 1105:TVYDPLQPEL:1114 SecStr : B TTGGG : ExpBur :ebeeeeeeee: |