CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (C) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | M 1 (M) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 318N 566K 567T (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6cs1_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6cs1_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : EEE S EE SS SSEEEEEEEE TT EEEEEESTT S EE TT EEEEEEESS EEEEEEESSSSTTS EEEEE: ExpBur :eeeebeeeeeeeeeebebbbbbbbbbeeeeeeeeeeeeeebbbbbeeebebbbbeeebbbbeebebeebbbbbbbbbbebbbbbbbbeebeeeeebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6cs1_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEE B SS EEEEETTT EEE TTBS EEEEEEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS EEE: ExpBur :bebeeebbbbbbbebbebbbbbbbbeeeebeeebbeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbbeeeebbbbebeeeeebeeebeeeebbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6cs1_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE EEEEEEEEEE --- B SEEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT S SEEEEEEEEEE EEE S: ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeebebeebeeebeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6cs1_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :S HHHHS S SS B EE SS HHHHS SSBS EE --- TTTTS BS EE EEEEE HHHHTT SSB TTTIIIII BB SSS : ExpBur :eebeeeeeeebbebeebebbbebeeeebeebbbebeebeeeeebebbebe---eeeeeebeeeebbbbbbbbbbebbebbbeeeeeebbbbbbebbeeeb: Contact :b queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6cs1_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEEE HHHH TT B S EEE SS BS S TTS SSSTT SEEE B SSS GGGS EEEEE B ------ B SS : ExpBur :bbbbbbebeeebbeeebbeeeebbebeeeebeebeebeeeeebbeeeeebeeeeeebeebeeebebebeeeeeebbbbbbbbbbe------ebbbebeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6cs1_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEEEE SS EEEEEEEE TT SEEE SSSSEEEEE TTT EEEEE EEEEEEEES TTT S EEEEET HHHHHHHHHTT EES: ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbebeeeeeebebeebeebbbbbbbbbeeebeebbbbbeebebeebeebbeeebeee: Contact : bb queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 6cs1_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEEETTEEEESSEEEEEEE SEEEETTEEEEEE --------- EEEEEEE S SSEEEEEEEEEEEEEEEEE EE: ExpBur :eeeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbbee---------eebbbbeeeeeeeeeeeeeeeebebbeebebebeeebbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6cs1_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E HHHHHTSS HHHHHTTGGG SHHHHHHHHHHHHHHHHHHHHHHHHTT SS S B SS B TTTS TTTT SS HHHHHHHHTT --------: ExpBur :bebebbbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeeeeeeeeebbebeebbbbeeeeeeebebbeebbeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :******* ***************************************************************************************: 6cs1_B_1 805:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : BEEE ------ EEE SS EEE SS HHHHHHHHHHHHHHHTTSTTHHHHSS HHHHHHHHHHHHT THHHHHTTTHHHHHHHHHHHHHH: ExpBur :eebeeee------eeeeeeeebbebeeeeeeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeebeeebbeebbebbeebb: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6cs1_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHS STTHHHHHHHHHHHHHHHHHHHTTS TTSS SSSHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebeebeebbeeeeeeebeeebeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbe: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6cs1_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : TTSSSSSSEEEE EEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS B SSSEEE S SSSSSS B : ExpBur :ebeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebeebbbbeeebbeeeeebbbeeeeeebbbbeebebeeebbeebbeeeeebeeeeeebee: queryA 1118:TVY:1120 :***: 6cs1_B_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |