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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | J 1 (J) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 32Q 65N (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6crw_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6crw_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : BS B EEEEE S S SS SEEEEEEEEE TTEEEEEEEE TTB S EE TTEEEEEEEESS EEEEESSSSTTS EEEEE: ExpBur :eeeebeeeeebeeeeeebbbbbbbbeeeeeeeeeeeebeebbbbbebebebbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeeeebbbbb: Contact : b b queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6crw_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEEE SS EEEEETTTTEEEE TT S EEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS E: ExpBur :bbbeebbbebbebebbebbbbbbeeeebebeebbbbeebeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebebbebeeebebeebbeeeebbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6crw_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE EEEEEEEEEE --- B EEE EE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHTSS SEEEEEEEEEE EEEE : ExpBur :eebebebebebeebbbbbbbbbe---ebbbbbbbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6crw_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr : SSS HHHHTS S STT EEEEE SEE TTTTS SSB EE --- THHHH EES EEEEEEEEEHHHHTT SSS TTHHHHHT B SSS : ExpBur :eeeebbebeebbebeebebbebbeeeebeebebebeebeeeeebeeeebe---bebbeebeeeebbbbbbbbbbebbebbbbeeeeebbbebbebbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6crw_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEEE TTTT BTT B S EEE SS BT B SSS SS TT B EEE BBSSS GGGSEEEEEEEE ------ EE : ExpBur :bbbbbbebeeebbeeebbeebebbeebeeebeeebebeeeebbbeeeeeeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbe------ebebbeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6crw_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SS EEEEETTEEEEEEEEE TT EE SSS EEE TTT EEEEE EEEEEEEES TTT S EEEEES HHHHHHHHHTT EES: ExpBur :ebeeeebbebebeeeeeebbbeeeeeeeeeeeeeeeeeeeeeebbbbeeeeebbebeebbebbbbbbbbbeeeeeebbbbbeebebeebeebeeeebbee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** **********************************************: 6crw_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEES EEEEEEE SEEEETTEEEEEE -------- EEEEEEE S SSEEEE EEEEEEEEEEE EE: ExpBur :ebeeeebeeeeeebeebbbbebeebeeeeeeebebeeebbbbeeee--------eebbbbeeeeeeeeeeeeeeeebebbeebebebeebbbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6crw_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E HHHHTSSS HHHHHHHTTT HHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTSTT S HHHHHHHHHH --------: ExpBur :bebeebbbbebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeebbebbbbbbeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****** ***************************************************************************************: 6crw_B_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : BEE ------- EE SS EEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHTT HHHHHTTHHHHHHHHHHHHHHHH: ExpBur :eebeee-------eeeeeeeebbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6crw_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHH TTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebeebebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbe: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6crw_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : STTSSSSSEEEEEEEEEETTEEEEEEEEEEEE EEEEEES EEETTEEEEESSSEEEE SS EEEE SSS B SSSEEEEEETTSSSS EES: ExpBur :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeeeebbeeeeebbbbeeebeeeeebeeeebeeeeebeebeebbee: queryA 1118:TVY:1120 :***: 6crw_B_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |