CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1095 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | IA 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 268E 269N (identity: 100.0 %/99.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7sg4_B_1 identity=99.8% |
queryA 35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134 :****************************************************************************************************: 7sg4_B_1 35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134 SecStr : S EE S SSEEEEEEEEE TT EEE BTTB EE TT EEEEEEESS S EEEEESSSSSSS EEEEEE SSSEEEE S TT: ExpBur :ebebbbbbbeeeeeeeeeeebebbbbbbeeebeeeebeeeeebbeebebeebbbbbbbbeebbbebbbbbeebeeeeebbbbbbbeebbbbbbbbbebee: queryA 135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234 :****************************************************************************************************: 7sg4_B_1 135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234 SecStr :STT STTBTTTB TT S S EEE SSGGGGG SSSSSS EEEEEEEEEETTEEEEEEEEEE S SSS EEEEEEEE SEEEES: ExpBur :ebeeeeeeeeeeeeebbbbbeeeeeeeeeebeeebeebeeeeebbebbbbbbbbeeeeebebbbbbeebeeeeebeeeebbbeeebebebebebeebbbb: queryA 235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334 :****************************************************************************************************: 7sg4_B_1 235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334 SecStr : TT TTS SSSS TT EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEE SEEEE B THHHHT S : ExpBur :bbebebeeeeebbbbbbbbbbebeebebbbebeeeeebeebbbbebebbbbbebeeeebebbebeeebeebeeeeeeebbbbeeeeeebebeebbeeeeb: Contact : bb queryA 335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434 :****************************************************************************************************: 7sg4_B_1 335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434 SecStr : TTT EEEEE S B THHHHHH SEEEESSS HHHHTTSEESEEEEEEEEEETTTGGGSSTT HHHHHHT TT EEEEEEESTTT TT : ExpBur :bbbebbeeeeeeebbbebeebeeeeebeeeeeeeeebeebbeeebbbbbbbbbbbbbebbeebbbeeeeebbbbbbebbeebebbbbbebbeeebeeeeb: queryA 435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534 :****************************************************************************************************: 7sg4_B_1 435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534 SecStr : TT B STT TTTTT SSS STT SSSTTS B TTS TTTSEEEEEEEEEE SS EES TTSEEEEESSS EE: ExpBur :beebebbbebeeeeeebbbbbeebbbbeeeeebeeeeeebeeeeeebeeeeeeeeeebbbbbbbbbbbeeeeeeebbbeeeeeeeeeeebbebebeeeee: queryA 535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634 :****************************************************************************************************: 7sg4_B_1 535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634 SecStr :EEEEEE TT EEE TT EEEEE TTSS EEEEE EEEEEEEE TTT S EEEEES HHHHSSS SS GGGSTTS EETTE: ExpBur :ebbbbeeeeebeeeeeebeeeeeeebbbbbeeeeebbebeebeebbbbbbbbbbeebeebbbbbeebebeebeeebeeeeebebeebebbbbbeeebeeb: queryA 635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734 :****************************************************************************************************: 7sg4_B_1 635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734 SecStr :EEES EE SS SEEEETTEEEEEE GGGGGGG EEEEEE S SSEEEEEEEEEEEEEEEEEE EEE HHHHHHTT HHHHHH: ExpBur :bbbbbbebeeeeeeebebeeebbbbeeeeeeeeeeeeebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbbbebeebbbeebeebeeb: queryA 735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834 :****************************************************************************************************: 7sg4_B_1 735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834 SecStr :HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHTT SS S EETTEE TTTSB TTSSS BHHHHHHHHHS SSSB TTS SBSS TTTTTS: ExpBur :beeeeeeeeebeeebeebbebbbebbeebbeebeeebeeeeeeebebbebeebbbeeeeeeebbebbbbbbebbbbbebbebeeeeeeebeeeeeeebee: queryA 835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934 :****************************************************************************************************: 7sg4_B_1 835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934 SecStr : TTSSEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHH: ExpBur :beeebbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeebeeebbeebeebbeebeeebeeebeebeebbebb: queryA 935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034 :********************************* *****************************************************************: 7sg4_B_1 935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034 SecStr :HHHHHHHHHHHHHHH TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTTSSSSEEEEEE: ExpBur :eebbebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbeebeeeebbbeeebbbbb: queryA 1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129 :***********************************************************************************************: 7sg4_B_1 1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129 SecStr :EEEETTEEEEEEEEEEEEEEEEEEEES EE SSSEEEESSSEEEE SS EEEE SSS B BTTTEEEES TTSSTT EE B TTHHHHT : ExpBur :bbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbebbeeeeebbeebbeeeeeeeeeeeeeeeebeeeeeeeeee: |