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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1088 aa] | Spike glycoprotein :Q3ZTF3_SARS | |
2 | b | I 1 (I) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 442Y 475Y 479N(R) (identity: 66.7 %/96.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8tc1_B_1 identity=96.9% |
queryA 16:LDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVI: 115 :************************************************************* **************************************: 8tc1_B_1 1:LDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVI: 100 SecStr : S SS B EEEE S B SS SEEEEEEEEE TT EEEEEEEETTEE EE TT EEEEEEESS EEEEESSSSTTS EEE: ExpBur :eebeeebeeeeeeeeeebebbebbbbbbeeeebbeeeeebeeebbbbebebbbbbbeeeebbbbebebeebbbbbbbbbbbbbbbbbbbbebeeebbbbb: queryA 116:IINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNT: 215 :*********************** ****************************************************************************: 8tc1_B_1 101:IINNSTNVVIRACNFELCDNPFFVVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNT: 200 SecStr :EEE SS EEEEEEEEEE SS EEEEETTTTEEEEE SEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS : ExpBur :bbeebebebbebbbbebbebbbbbbbeeeeebeeebbeeebeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebebbebeeebeeeeebbeebeb: queryA 216:LKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR: 315 :*********** *************** ***********************************************************************: 8tc1_B_1 201:LKPIFKLPLGIKITNFRAILTAFSPAQGTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR: 300 SecStr :BEEEEEEE EEEEEEEEEESSSS B EEEEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHT S SEEEE EEEE: ExpBur :beeeeebebebebeebbbbbbbbbeeeeeebbbbbbbbbbebeebebbbebbeeeebeebbbbeeebbbebbbeeeebebeebeeebeebeeeeeeebbb: queryA 316:FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD: 415 :**************************** *************** *******************************************************: 8tc1_B_1 301:FPNITNLCPFGEVFNATKFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD: 400 SecStr : SB HHHHHT S BGGG EEEEE SEE GGGGGGT SEEEEESS GGGGGG EEEEEEEEEEEEEGGGGGGSSTT SHHHHHT TT: ExpBur :bbebeeebebeebbeeeebbbbebbeeeebeebebeeeebeeeeeeeeeebbebeeeebeebbbbebebbbbbbbbebbebbbeeeebebbbebbebbee: queryA 416:FMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKL: 515 :********************************************** ********* ****** ****** ****************************: 8tc1_B_1 401:FMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSSDGKPCTPPAPNCYWPLRGYGFYTTSGIGYQPYRVVVLSFELLNAPATVCGPKL: 500 SecStr : EEEEEEE HHHH BTT B EEE SS TT B TT S SSSTT B SEEE BBTT GGGSEEEEEEEEEEESSS EE S : ExpBur :bebbbbbbebeeebbeeebbeebebbeeeeeebeeeeebeeeebbbeeeeeeeeeeeebeebbebbebeeeeeebebbbbbbbebbebeeeebebbbeee: Contact : b b b queryA 516:STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQL: 615 :********************************************************************************************* : 8tc1_B_1 501:STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTLXXXXXX: 600 SecStr : SS EEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE S EEEEES TTT S EEEETT SS ------: ExpBur :eeeeeeeebbebbbbbeeeebebeeeeeebeeeebbbeeeeeebbbbbbbeeeebbebeebeebbbbbbbbbeeeeeeebbbbeebebeeeeee------: queryA 616:TPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAK: 715 : ********************************************** *********************************************: 8tc1_B_1 601:XXAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAK: 700 SecStr :-- S S SS EEETTEEEES EE S SEEEETTEEEEEEE ------- EEEEEEE S SSEEEEEEEEEEEEEEEEEE E: ExpBur :--eeebeeeeeebbebebbbbbebbeeeeeeeeebebeeebbbbbeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbb: queryA 716:TSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGF: 815 :*************************** ********************* ************ *************************************: 8tc1_B_1 701:TSVDCNMYICGDSTECANLLLQYGSFCRQLNRALSGIAAEQDRNTREVFVQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGF: 800 SecStr :EEE HHHHHHTT HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH SS S TTT GGGS SSSS SS HHHHHHHHTS S SSS: ExpBur :bebebeebbbeebeebbeebeebeeebeebeebbeebbeebbbbbeebbeebeeeeeebeebebeebebeebbbeeebeeeebebbbbbbeebeeeeeee: queryA 816:MKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQ: 915 :****************************************************************************************************: 8tc1_B_1 801:MKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQ: 900 SecStr : HHHHTT GGG HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTSTTSSS HHHHHHHHHHTTT HHHHHHTHHHHHHHHHHHHHH: ExpBur :eeeeeebeeeeeeeeeebebeeebbeeeeeebeeeebbebbbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbee: queryA 916:IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV:1015 :****************************************************************************************************: 8tc1_B_1 901:IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV:1000 SecStr :HHHHHHS TTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT: ExpBur :beeebeeeeeebeebbebbeebeebbeebeeebeeeeebebbebeebeeeeeeebbeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebb: queryA 1016:LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGII:1115 :**************************************************************** *********************************: 8tc1_B_1 1001:LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFSXXSWFITQRNFFSPQIITTDNTFVSGNCDVVIGII:1100 SecStr :SS STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEE S EEETTEEEE SS EEEE -- EEEE TTS EE TTT EEEEESSSSTT E: ExpBur :bebbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeebbbeeeebbbbee--ebbbbbeebbeeeebeeebbeeeeeeeebeebe: queryA 1116:NNTVY:1120 :*****: 8tc1_B_1 1101:NNTVY:1105 SecStr :E : ExpBur :eeebe: |