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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [958 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | I 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 1055R 1080N 1082T 1085F (identity: 100.0 %/87.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h15_B_1 identity=87.8% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** **************** ***********************************: 8h15_B_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEXXNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEEE S EE SSS S EEEEEEEE TTEEEEEE ------- EE SSEEEEEE -- EEEEESSSSTTS EEEEEEETTEEEEEEE : ExpBur :eebebbebbbbeeeeeebeeeeeebeebbbbbebebebee-------eeebebeebbbbbbbe--eebebbbbbbebeeebebbebbeeeeeebbebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :** ************ ************************ ***********************: 8h15_B_1 121:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIXXXXDLPSGFNTLKPIFKLPLGINITN: 220 SecStr : ---------------------- SEEEEEEE ------------- EEEEEEEEEETTEEEEEEEEEE ---- S EEEEEEEE E: ExpBur :ee----------------------eeeeeeeeeeee-------------eebbbbbbbeeeeebebbebeeee----ebeeeeebbeeeeebebebebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :***** *********************************************************************************: 8h15_B_1 221:FRAILXXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEE -------------- EEE EEEEEEEEE SSS EEEEEETTSSHHHHHHHHTT S EEEEEEEEEEB EEE SB HHHHS: ExpBur :bebbe--------------ebbbbbebeebebbbebeeeeebeebbbbebebbbbbbbeeeebebeebeeebeebebeeeeebbbbbebeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*********************************************************************************************** : 8h15_B_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTXXXXX: 420 SecStr : S BGGG EEEEE SBB TTTSSSS SEEEEESS GGGGGT EES EEEEEEEE STTSTT SSS SSHHHHT TT EEEEEEE -----: ExpBur :eeebeebeebeeeebeebbbebbebeeeeebeeeebbebebeebbeebbbbbebbbbebeeebeebbbeeeeeebbbebbebbeebebbbbbbee-----: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 : ***************** ***************************************: 8h15_B_1 421:XXXXXXXXKYRYLRHGKLRPFERDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr :-------- SS TT ------------------------------------ EEEEEEEE SSS EE S SS B EEET: ExpBur :--------eeeeeeeeebeeeeeee------------------------------------eebebbbbbbeeeeeebebbbeeeeeeeeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h15_B_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620 SecStr :TEE BEEEE TT B TTS EEE TTT EEEEE EEEEEEEEE TTT S EEEEET SHHHHHHHHTT BSS SS S EEE: ExpBur :eeeeebbbeebeeebeeeebebeeeeeeebbbbbeeeeebbebeebeebbbbbbbbbbeebeebbbbbeebebeebbebeeeeebebebeeeebeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h15_B_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SSEEEES EE S SEEEETTEEEEEE -------- EEEEEE SSEEE EEEEEEEEEEE EEEE HHHHTT S SH: ExpBur :bebbbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :******************************************************************************** ******* : 8h15_B_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXKQYGECLXXXXXXX: 820 SecStr :HHHHHGGG SSHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTSSSSS HHHHHHHHHS ------ S -------: ExpBur :beebbeeeeebbeebeeebeebbebbeebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeeebebbebbbebbee------eebbeee-------: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 : ***************************************************************************************************: 8h15_B_1 821:XICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr :- TT EEEE SS HHHHHHHHHHHHHHHHHT SSTTSSS HHHHHHHHHHHTT THHHHHSHHHHHHHHHHHHHHHHHHHHTT HHH: ExpBur :-eeeeeebbbebeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :****************************************************************************************************: 8h15_B_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHTTS TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebbeebeebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbeebeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1121 :*******************************************************************************************: 8h15_B_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1111 SecStr :EEEEEEEETTEEEEEEEEEEE EEEEES EESSS EEEESSSEEEE SSSEEEE TTS B SSSEEE S TTSSTT EE : ExpBur :bbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeebeeeeeeeeeebee: Contact : b b b b |