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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (A) | polymer(polypeptide(L)) [1022 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | CA 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 268E 269N (identity: 100.0 %/93.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h0z_B_1 identity=93.3% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** *****************************************************: 8h0z_B_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEEE SEEEE S S EEEEEE TTEEEEEE ------- EE TT EEEEEEESS EEEEEEES SSSSS EEEEEE SS EEEEEE : ExpBur :eebebbebbbbeeeeeeeeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbbeeeebbbbbbbeebeeebebbbbbeeeebbebebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :******** ******************* ***************************************************: 8h0z_B_1 121:ELCDNPFFXXXXXXXXXXXTMIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220 SecStr : B SS B ----------- BS S EEEE ----------- EEEEEEEEEETTEEEEEEEEE SSS EEEEEEEEE E: ExpBur :ebeeebeb-----------eebeeeeeeeeeeeebeee-----------ebbebbbbbeeeeebbbbebeeebeeeeebeeeebbbeeeeebebebebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :******* **********************************************************************************: 8h0z_B_1 221:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEE ----------- EEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT S SEEEEE EEEE SB HHHHTS: ExpBur :bbbbeee-----------ebbbbbbebeebebbbebeeebebeebbbbeeebbbbbbbeeeeeebeebeeebeebeeeeeeebbbbeebeeebebeebbe: Contact : bb queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*************************************** ************************************************************: 8h0z_B_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 420 SecStr : S BSTT EEEEE SEE GGGGSSS SEEEEESS SGGGSS EES EEEEEEEE GGGGGGSSTT SHHHHHT TT EEEEEEE HHHH : ExpBur :eeebbbbbebeeeebeebbeeeeebeeeeeeeeeebeeeeeeebeebbbbebebbbbbbbeebbebbbeeeeeebbbebbebbeebebbbbbbebeeebb: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h0z_B_1 421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr : TT TT EEE SS TT B SSS TTSTT B SEEE SSS GGGS EEEEEEE SSS EE SSEEEEEET: ExpBur :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbebbebeeeebebbbeeeeeebeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :************************************************************************** ************: 8h0z_B_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTXXXXXXXXXXXXXXWRIYSTGNNVFQ: 620 SecStr :TEEEEEEEEE TT EEE TT EEEEE TTT EEEEE S EEEEES TTT S EEEETT -------------- S S EEE: ExpBur :bbeeebbbeeeeeebeeeebebeeeeeeebbbebeeeeebbebeebeebebbbbbbbeeeeeebbbbbeeeebe--------------eeeeeeeeeebe: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h0z_B_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SS EEES EE SS SEEEETTEEEEEE -------- EEEEEE TTEEEEEEEEEEEEEEEEEE EEEE HHHHHTTT HH: ExpBur :beebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :******************************************************************************** ********* **: 8h0z_B_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXGFMKQYGECXXXXXXRD: 820 SecStr :HHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTT SS S EETTEE GGGS SSSSSSS HHHHHHHHHS --- SS ------ : ExpBur :beebbeeeeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeebbebbbbbbeebee---eeeeeeeee------ee: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h0z_B_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr :HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHTTSTTTTTTSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHHHHHHS SSSSHHH: ExpBur :ebbebeeebbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbeebbeebeeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************ ***************************************************************: 8h0z_B_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbbebeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h0z_B_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEEESSSEEEE SSSEEEE SSS B BSTTEEE S SSSSTT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbebbbeeeebbeeebeeeeeeeeeeeeeeeebeeee: |