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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1032 aa] | Spike glycoprotein :SPIKE_CVHSA | |
2 | b | CA 1 (c) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 699N 700F 904Q 908Q (identity: 100.0 %/92.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6nb7_B_1 identity=92.7% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :**** ************************************************ ****************************************: 6nb7_B_1 37:RCTTXXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136 SecStr : ------- EEEE TT EE SS SEEEEEEEEE TT EEEEEEEETTEE EEE TTEEEEEEEESS EEEEEEESSSSTTS EEEEE: ExpBur :eeee-------eeeeeebbbbebeeeeeeeeeeeeeebebebbebeeebeebeeeeeeeeeeeeebeebbbeeeebeeebebebebbeeeeeeeebeeee: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :******************** ********************* ***************************************: 6nb7_B_1 137:NNSTNVVIRACNFELCDNPFXXXXXXXXXXXHTMIFDNAFNCTFEYISDAFSXXXXXXXXXFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236 SecStr :E SSSEEEEEEEEEE SS ----------- SEEEEEEEEEEEE --------- EEEEEEEEEETTEEEEEEEEEE SSS S EEE: ExpBur :eeeebeeebbbbbbebeeee-----------eebebeeeeeeebeeeeeeee---------eeeeeeebebeeeebebebeeeeebebeeeeeeeeeebe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :******************* ********************************************************************: 6nb7_B_1 237:PIFKLPLGINITNFRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336 SecStr :EEEEE SEEEEEE ------------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEE : ExpBur :eeeeeebeeeeebbbebbe-------------eebbeeebeebebbbebeeebeeeeebbbebeeebbbebeeeeeebeebeeeeeebeeeeeeebebbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 6nb7_B_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436 SecStr :S B S HHHHS S BSTT EEEEE SEE HHHHT SS SEEEEESS GGGGGG BS EEEEEEEEEGGGGGGSSTT SHHHHHT B SS E: ExpBur :eeeeebeeeeeeeeeeeebbbebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebebebeebbbbeeeeeebeeeeeeeebbebbbbeeeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************** *********** *********: 6nb7_B_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFXXXXXXXXQPYRVVVLSFEXXXXXXTVCGPKLST: 536 SecStr :EEEEEEE TTTT TT TT EEE SS BT B TTS TTSTT B SEEE -------- EEEEEEEEE ------ EE : ExpBur :beeebbebeeeeeeeeebeebbbbeeeeeebeeebeeeeeeebeeeeeeeeeeeeebeebeeebeb--------ebbbebeeeee------ebeeeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 6nb7_B_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636 SecStr : TTSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEEETS HHHHHHHHHTT EES: ExpBur :eeeeeebbebeeeeeeeebbeeeeeeeebeeeeeeeeeeeeebbbbbeeeeebbbeeebeebebbbbbbbeeeeeeebbbbbebebeebeebeeeebbee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** ***********************************************: 6nb7_B_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736 SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEE EEEEEEEEEEE EEE: ExpBur :eeeeeeeeebeeebeebbbbebeeeeeeeeeebeeeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: Contact : bb queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************* : 6nb7_B_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836 SecStr :E HHHHH SS HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SS S BTTB TTTSB TTSS SBHHHHHHTT ---------: ExpBur :bebeebbbeeeeebeebbeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeeeeebebeebbbeeeeeeeebebbbbbeeee---------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****** **************************************************************************************: 6nb7_B_1 837:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936 SecStr : BEE -------- EE TT EEEE SS HHHHHHHHHHHHHHHHHSGGGTTTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHH: ExpBur :ebbeee--------eeeebebbbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe: Contact : b b queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6nb7_B_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036 SecStr :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS SSTHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebeebeeebeeeebeeebeebbebbbebbeebbeebeeebeebeebbeebbebbebbbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6nb7_B_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136 SecStr : STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EEETTEEEEESSSEEEEETTEEEEEETTEEEEE BGGGEEEEEETTS TT EE : ExpBur :ebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeebebebbebbbeeeebeeeeebebbeeeeeeebbbebbeeeeebbeeebeeeeeeeeeeeeeeb: queryA 1118:TVYDPLQPEL:1127 :**********: 6nb7_B_1 1137:TVYDPLQPEL:1146 SecStr : B THHHH : ExpBur :ebeeeeeeee: |