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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | CA 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 691N (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6cs0_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6cs0_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S B EEEEE S SS S EEEEEEEE TTEEEEEEEE TTB S EE TTEEEEEEEESS EEEEESSSSTTS EEEEE: ExpBur :eeeebeeeeebeeeeeebbebbbbeeeeeeeeeeeeeeeeebbbbebebebbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeeeebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6cs0_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEE SS EEEEETTTTEEEE TT S S EEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS E: ExpBur :bebebbbbbbbebebbebbbbbbeeeebebeebbbbeebeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebbbbebeeebebeeebeeeebbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6cs0_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE EEEEEEEEEE --- EEE EE EEEEEEEEE TT EEEEEESSS HHHHHHHHHTSS SEEEEEEEEEE EEE : ExpBur :eeeebebebebeebbbbbbbbbe---ebbbbbbbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6cs0_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr : SSS IIIIIS S STT EEEEE SEE TTTTSSSSB EE --- THHHH EES EEEEEEEE STTTTT SSS TTTTTTTT B SSS : ExpBur :eeeebbebeebbebeebebbeebeeeebeebebebeebeeeeebeeeebe---bebbeebeeeebebbbbbbbeebbebbbeeeeeebbbebbebbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6cs0_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEEE HHHH SS B EEE SS BT B TT SS TT B SEEE B SSS GGGS EEEEEEE ------ EE : ExpBur :bbbbbbebeeebbeeebbeebebbeeeeeebeeeeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbe------ebebbeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6cs0_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SS EEEE SS EEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEES TTT S EEEEES HHHHHHHHHTT EES: ExpBur :eeeeeebbebebeebeeebbbeeeeeeeeeeeeeeeeeeeeebbbbbbeeeebbebeebbebbbbbbbbbeeeeeebbbbbeebebeebeebeeeebbee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** **********************************************: 6cs0_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEES EEEEEEE SEEEETTEEEEEE -------- EEEEEEE S SSEEEE S EEEEEEEEE E: ExpBur :ebeeeeeeeeeeebeebbbbebeeeeeeeeeebebeeebbbbeeee--------eebbbbeeeeeeeeeeeeeeeebebbeebebebeebbbbbbbbbbe: Contact : b queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6cs0_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E HHHHTSSS HHHHHHHHHH S TTTTTTHHHHHHTHHHHHHHHHHTT SS S EETTEE TTTS TTSTTS HHHHHHHHHH --------: ExpBur :bebeebbbbebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbbebbeeee--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****** ***************************************************************************************: 6cs0_B_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : BEE ------- EE SS EE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHTT HHHHHTTHHHHHHHHHHHHHHHH: ExpBur :eebeee-------eeeeeeeebbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6cs0_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHH TTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTTTTTTTTTTTTS: ExpBur :eebeeebeebeebeebeeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbe: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6cs0_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : TTSSSSSEEEEEE EETTEEEEEEEEEE EEEEEES EEETTEEEEESSSEEEE SS EEEEETTEEEEEE SSSEEE S TTSSTT EE : ExpBur :ebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeeebbbeeeeebbbbeeebebeeebeeeebeeeeebeeeeebbeb: queryA 1118:TVY:1120 :***: 6cs0_B_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |