Protein Model on 8h0z_B_1_C_1
(TEMPLATE: 
8h0z
)Protein Model on 8h0z_B_1_C_1
(TEMPLATE: 8h0z
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (A) | polymer(polypeptide(L)) [1022 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1035 aa] | Spike glycoprotein :SPIKE_SARS | 42Y 45E 46I 47F 51T 110K 112Q 158N 191D 192G 193F 221K 223P 225G 227N 352Y 356Y 357N 360F 361F 362S 364F 371A 372T 375N 414D 415D 717S 727D 733N 737Q 738Y 739G 740S 741F 747R 768K 769Q 770M 771Y 772K 779F 816M 817K 818Q 819Y 836K 837F 841T 843L 844P 845P 846L 848T 851M 854A 855Y 864A 865T 871G 872A 874A 875A 876L 877Q 878I 879P 880F 882M 886Y 895Q 896N 899Y 900E 903K 945V 948L 949S 957S 958V 960N 961D 963L 964S 965R 966L 967D(C) 976D 987Q 991T 994L 995I 1001R 1012S 1013E 1021R (identity: 99.0 %/93.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h0z_B_1 identity=93.3% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** *****************************************************:
8h0z_B_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr : EEEE SEEEE S S EEEEEE TTEEEEEE ------- EE TT EEEEEEESS EEEEEEES SSSSS EEEEEE SS EEEEEE :
ExpBur :eebebbebbbbeeeeeeeeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbbeeeebbbbbbbeebeeebebbbbbeeeebbebebbbb:
Contact : b bbb b b b
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
:******** ******************* ***************************************************:
8h0z_B_1 121:ELCDNPFFXXXXXXXXXXXTMIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220
SecStr : B SS B ----------- BS S EEEE ----------- EEEEEEEEEETTEEEEEEEEE SSS EEEEEEEEE E:
ExpBur :ebeeebeb-----------eebeeeeeeeeeeeebeee-----------ebbebbbbbeeeeebbbbebeeebeeeeebeeeebbbeeeeebebebebee:
Contact : b bbb b b b b
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:******* **********************************************************************************:
8h0z_B_1 221:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr :EEEEE ----------- EEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT S SEEEEE EEEE SB HHHHTS:
ExpBur :bbbbeee-----------ebbbbbbebeebebbbebeeebebeebbbbeeebbbbbbbeeeeeebeebeeebeebeeeeeeebbbbeebeeebebeebbe:
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:*************************************** ************************************************************:
8h0z_B_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 420
SecStr : S BSTT EEEEE SEE GGGGSSS SEEEEESS SGGGSS EES EEEEEEEE GGGGGGSSTT SHHHHHT TT EEEEEEE HHHH :
ExpBur :eeebbbbbebeeeebeebbeeeeebeeeeeeeeeebeeeeeeebeebbbbebebbbbbbbeebbebbbeeeeeebbbebbebbeebebbbbbbebeeebb:
Contact : b bb bbb b bb b bb
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
:****************************************************************************************************:
8h0z_B_1 421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr : TT TT EEE SS TT B SSS TTSTT B SEEE SSS GGGS EEEEEEE SSS EE SSEEEEEET:
ExpBur :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbebbebeeeebebbbeeeeeebeeeebbebbbb:
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:************************************************************************** ************:
8h0z_B_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTXXXXXXXXXXXXXXWRIYSTGNNVFQ: 620
SecStr :TEEEEEEEEE TT EEE TT EEEEE TTT EEEEE S EEEEES TTT S EEEETT -------------- S S EEE:
ExpBur :bbeeebbbeeeeeebeeeebebeeeeeeebbbebeeeeebbebeebeebebbbbbbbeeeeeebbbbbeeeebe--------------eeeeeeeeeebe:
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h0z_B_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr : SS EEES EE SS SEEEETTEEEEEE -------- EEEEEE TTEEEEEEEEEEEEEEEEEE EEEE HHHHHTTT HH:
ExpBur :beebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbebebeebbbeebee:
Contact : b b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:******************************************************************************** ********* **:
8h0z_B_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXGFMKQYGECXXXXXXRD: 820
SecStr :HHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTT SS S EETTEE GGGS SSSSSSS HHHHHHHHHS --- SS ------ :
ExpBur :beebbeeeeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeebbebbbbbbeebee---eeeeeeeee------ee:
Contact : b bbbbb b bbbbb b bbbb
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
:****************************************************************************************************:
8h0z_B_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr :HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHTTSTTTTTTSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHHHHHHS SSSSHHH:
ExpBur :ebbebeeebbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbeebbeebeeebeeeeeebeeb:
Contact : bb b bbbb b b bb bb bb bbbbbbb b b bb bb b
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:************************************ ***************************************************************:
8h0z_B_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbbebeeeebbbeeeb:
Contact : b bb bb bb bbbbb b b b bb b bb b
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h0z_B_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEEESSSEEEE SSSEEEE SSS B BSTTEEE S SSSSTT EE B :
ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbebbbeeeebbeeebeeeeeeeeeeeeeeeebeeee:
|
[assembly_id:1]
[help]