Protein Model on 6nb7_B_1_C_1
(TEMPLATE: 
6nb7
)Protein Model on 6nb7_B_1_C_1
(TEMPLATE: 6nb7
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1032 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1048 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 218P 269N 722M 737Q 738Y 739G 740S 747R 768K 769Q 770M 771Y 772K 776L 779F 835Q 836K 837F 839G 845P 846L 848T 851M 854A 855Y 876L 877Q 878I 879P 882M 886Y 894T 895Q 896N 899Y 976D 987Q 1001R 1009T 1012S 1013E (identity: 100.0 %/92.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6nb7_B_1 identity=92.7% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:**** ************************************************ ****************************************:
6nb7_B_1 37:RCTTXXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr : ------- EEEE TT EE SS SEEEEEEEEE TT EEEEEEEETTEE EEE TTEEEEEEEESS EEEEEEESSSSTTS EEEEE:
ExpBur :eeee-------eeeeeebbbbebeeeeeeeeeeeeeebebebbebeeebeebeeeeeeeeeeeeebeebbbeeeebeeebebebebbeeeeeeeebeeee:
Contact : b bbb
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:******************** ********************* ***************************************:
6nb7_B_1 137:NNSTNVVIRACNFELCDNPFXXXXXXXXXXXHTMIFDNAFNCTFEYISDAFSXXXXXXXXXFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr :E SSSEEEEEEEEEE SS ----------- SEEEEEEEEEEEE --------- EEEEEEEEEETTEEEEEEEEEE SSS S EEE:
ExpBur :eeeebeeebbbbbbebeeee-----------eebebeeeeeeebeeeeeeee---------eeeeeeebebeeeebebebeeeeebebeeeeeeeeeebe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:******************* ********************************************************************:
6nb7_B_1 237:PIFKLPLGINITNFRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr :EEEEE SEEEEEE ------------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEE :
ExpBur :eeeeeebeeeeebbbebbe-------------eebbeeebeebebbbebeeebeeeeebbbebeeebbbebeeeeeebeebeeeeeebeeeeeeebebbe:
Contact :b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6nb7_B_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr :S B S HHHHS S BSTT EEEEE SEE HHHHT SS SEEEEESS GGGGGG BS EEEEEEEEEGGGGGGSSTT SHHHHHT B SS E:
ExpBur :eeeeebeeeeeeeeeeeebbbebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebebebeebbbbeeeeeebeeeeeeeebbebbbbeeeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************** *********** *********:
6nb7_B_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFXXXXXXXXQPYRVVVLSFEXXXXXXTVCGPKLST: 536
SecStr :EEEEEEE TTTT TT TT EEE SS BT B TTS TTSTT B SEEE -------- EEEEEEEEE ------ EE :
ExpBur :beeebbebeeeeeeeeebeebbbbeeeeeebeeebeeeeeeebeeeeeeeeeeeeebeebeeebeb--------ebbbebeeeee------ebeeeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6nb7_B_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr : TTSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEEETS HHHHHHHHHTT EES:
ExpBur :eeeeeebbebeeeeeeeebbeeeeeeeebeeeeeeeeeeeeebbbbbeeeeebbbeeebeebebbbbbbbeeeeeeebbbbbebebeebeebeeeebbee:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** ***********************************************:
6nb7_B_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEE EEEEEEEEEEE EEE:
ExpBur :eeeeeeeeebeeebeebbbbebeeeeeeeeeebeeeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************* :
6nb7_B_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr :E HHHHH SS HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SS S BTTB TTTSB TTSS SBHHHHHHTT ---------:
ExpBur :bebeebbbeeeeebeebbeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeeeeebebeebbbeeeeeeeebebbbbbeeee---------:
Contact : b bbbb b bbbbb b b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:****** **************************************************************************************:
6nb7_B_1 837:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr : BEE -------- EE TT EEEE SS HHHHHHHHHHHHHHHHHSGGGTTTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHH:
ExpBur :ebbeee--------eeeebebbbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe:
Contact : bbb b bb b b bb bbbb b b bbb b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6nb7_B_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS SSTHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:
ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebeebeeebeeeebeeebeebbebbbebbeebbeebeeebeebeebbeebbebbebbbbb:
Contact : b b b b bb
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6nb7_B_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr : STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EEETTEEEEESSSEEEEETTEEEEEETTEEEEE BGGGEEEEEETTS TT EE :
ExpBur :ebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeebebebbebbbeeeebeeeeebebbeeeeeeebbbebbeeeeebbeeebeeeeeeeeeeeeeeb:
queryA 1118:TVYDPLQPEL:1127
:**********:
6nb7_B_1 1137:TVYDPLQPEL:1146
SecStr : B THHHH :
ExpBur :ebeeeeeeee:
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[assembly_id:1]
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