Protein Model on 6cs1_B_1_C_1
(TEMPLATE: 
6cs1
)Protein Model on 6cs1_B_1_C_1
(TEMPLATE: 6cs1
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (C) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
| 2 | b | C 1 (A) | polymer(polypeptide(L)) [1066 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | 301Q 304N 341E 342R 367Y 372T 373K 376D 383Y 415D 444R 449R 450P 451F 452E 453R 454D 455I 456S 457N 458V 502E 535T 544R 545F 546Q 548F 549Q 550Q 551F 552G 553R 554D 555V 556S 557D 558F 573I 574S 575P 577S(A) 578F 600D 632Q 651P 652I 653G 654A 655G 679M 681L 682G 683A 684D 685S 686S 687I 688A 689Y 690S 691N 692N 693T 694I 695A 939Q 943T 947Q 950S 951N 952F 953G 977R 984Q 995I 999E 1021R 1022V 1023D 1028G 1029Y 1054E 1061P 1071F 1072P 1089R 1090N 1103F 1105S 1111V (identity: 98.9 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6cs1_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6cs1_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr : EEE S EE SS SSEEEEEEEE TT EEEEEESTT S EE TT EEEEEEESS EEEEEEESSSSTTS EEEEE:
ExpBur :eeeebeeeeeeeeeebebbbbbbbbbeeeeeeeeeeeeeebbbbbeeebebbbbeeebbbbeebebeebbbbbbbbbbebbbbbbbbeebeeeeebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6cs1_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr :E SS EEEEEEE B SS EEEEETTT EEE TTBS EEEEEEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS EEE:
ExpBur :bebeeebbbbbbbebbebbbbbbbbeeeebeeebbeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbbeeeebbbbebeeeeebeeebeeeebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:*********************** **************************************************************************:
6cs1_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr :EEEEEE EEEEEEEEEE --- B SEEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT S SEEEEEEEEEE EEE S:
ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeebebeebeeebeebebeeeeebbbbe:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:************************************************** ***********************************************:
6cs1_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr :S HHHHS S SS B EE SS HHHHS SSBS EE --- TTTTS BS EE EEEEE HHHHTT SSB TTTIIIII BB SSS :
ExpBur :eebeeeeeeebbebeebebbbebeeeebeebbbebeebeeeeebebbebe---eeeeeebeeeebbbbbbbbbbebbebbbeeeeeebbbbbbebbeeeb:
Contact : bb b bb b b b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:************************************************************************************* *********:
6cs1_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr : EEEEEE HHHH TT B S EEE SS BS S TTS SSSTT SEEE B SSS GGGS EEEEE B ------ B SS :
ExpBur :bbbbbbebeeebbeeebbeeeebbebeeeebeebeebeeeeebbeeeeebeeeeeebeebeeebebebeeeeeebbbbbbbbbbe------ebbbebeee:
Contact : b bbbbbbbbbb b
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:*********************************************************** ****************************************:
6cs1_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr : SSEEEEE SS EEEEEEEE TT SEEE SSSSEEEEE TTT EEEEE EEEEEEEES TTT S EEEEET HHHHHHHHHTT EES:
ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbebeeeeeebebeebeebbbbbbbbbeeebeebbbbbeebebeebeebbeeebeee:
Contact : b bbb bbbbbbbbbbb bbb bb b
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************* **********************************************:
6cs1_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr : SS TT EEEETTEEEESSEEEEEEE SEEEETTEEEEEE --------- EEEEEEE S SSEEEEEEEEEEEEEEEEE EE:
ExpBur :eeeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbbee---------eebbbbeeeeeeeeeeeeeeeebebbeebebebeeebbbbbbebbe:
Contact : b bbbbb b bbbbbbbbbbbbbbb
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************** :
6cs1_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr :E HHHHHTSS HHHHHTTGGG SHHHHHHHHHHHHHHHHHHHHHHHHTT SS S B SS B TTTS TTTT SS HHHHHHHHTT --------:
ExpBur :bebebbbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeeeeeeeeebbebeebbbbeeeeeeebebbeebbeebe--------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:******* ***************************************************************************************:
6cs1_B_1 805:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr : BEEE ------ EEE SS EEE SS HHHHHHHHHHHHHHHTTSTTHHHHSS HHHHHHHHHHHHT THHHHHTTTHHHHHHHHHHHHHH:
ExpBur :eebeeee------eeeeeeeebbebeeeeeeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeebeeebbeebbebbeebb:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6cs1_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr :HHHHS STTHHHHHHHHHHHHHHHHHHHTTS TTSS SSSHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS:
ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebeebeebbeeeeeeebeeebeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbe:
Contact : b b b bbbb b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6cs1_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr : TTSSSSSSEEEE EEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS B SSSEEE S SSSSSS B :
ExpBur :ebeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebeebbbbeeebbeeeeebbbeeeeeebbbbeebebeeebbeebbeeeeebeeeeeebee:
Contact : bbb bb b b bb bb b b b
queryA 1118:TVY:1120
:***:
6cs1_B_1 1105:TVY:1107
SecStr : :
ExpBur :ebe:
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[assembly_id:1]
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