Protein Model on 6acj_B_1_C_1
(TEMPLATE: 
6acj
)Protein Model on 6acj_B_1_C_1
(TEMPLATE: 6acj
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 48R 49S 51T 218P 269N 400G 719D 720C 721N 722M 737Q 738Y 740S 741F 744Q 747R 768K 769Q 770M 771Y 772K 774P 832I 833C 834A 835Q 837F 838N 839G 844P 845P 846L 847L 848T 851M 855Y 861S 862G 865T 866A 868W 869T 872A 876L 877Q 878I 879P 882M 886Y 889N 894T 895Q 896N 899Y 945V 948L 949S 984Q 987Q 991T 994L 1001R 1009T 1013E 1016L 1021R (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acj_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acj_B_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S EEE TT SS SS EEEEE TT EEEEEEE TT EE SS EEEEEE SSS S EEEESSSSTT EEEEEE:
ExpBur :eebebeeeeeeeebeeebbebbbbbeeeeeeeeeeeeeebebbbbebebebbebeeeebbbeebebeebbbbbbbbbbebbbbbbbbbebeeebebbbbb:
Contact : b bbbbb b
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acj_B_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSEEEEEEEEE SS EEEE TTT TT SSEEEEEEEEEEEE S SSBT EEEEEEEETTEEEEEE B SSS S E:
ExpBur :beeebbbbbbbbbebbebbbbebeeeeeeeeeebeeeeeeeeeeeeebeeeebebbeeeeebeebbbbbbbeeeeebbbbebeeebeeeeeeeebebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acj_B_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEEE EEE EEEE ---- SEEEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT SS SEEEEEEE B SEEE :
ExpBur :eeeebebeeebeebebbbbbbe----ebbbbebbbbbbebeebebbbebbeebebeebbbbebebbbebbbeeeeeebeebeeebeebebeeeeebbbbb:
Contact :b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acj_B_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr :S B THHHHTS S STT EEEEE S B TTTSS SEEEESSS SGGGGGS BS EEEEEEEE SSTTTT SSS SHHHHH SSS :
ExpBur :eeeeebebeebbeeeebbbbeebeeeebeebebebeeeeeeeeeeeeeeeeeeeeebeeebbbbbbbbbbbbbbebbebbbeeeeeeebbebbbbbeeeb:
Contact : b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acj_B_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTS TT S B SS SS B TT TTSTT B B SS GGGS EEEEEEEE TT SS BB S :
ExpBur :bbbbbbbbeeeebeeebbeeeebbeeeeeebeeeeeeeeeeebbeeeeebebeeeebeebeebbebeeeeeeeebbbbbbbbbbeeeebebbbbbeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acj_B_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : TTS EEEE SS EEEEEEEE S TT TTTS EEEETTTEEEEEE EEEEEEEE SSS EEEEEE SSHHHHHHHTT BSS:
ExpBur :eeeeeebbebbbbeeeeebebeeeeeeeeeeebeeeeeeeeeebbebeeeeebbbeeebbebbbbbbbbbbeeeeebbbbbeebebeebeebbeeebbeb:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acj_B_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS B SSS EES B SS SSB SSS EE ------------- BEE S SS B SEE B EEE EE:
ExpBur :ebeeeeeebebeeeeebbbbebeeeeeeeeeebebeeebbbee-------------ebbbeebeeeeeeeeeeeeeeebebebebebeeebbbbbbbbbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acj_B_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E STTTS SHHHHHHHHT THHHHHHHHHHHHHHHHHHHHHHHHTT SS S STT TTTS TTSSS S HHHHHHHHH ------:
ExpBur :bebeebbbeeeeebeebbeeeeeeeeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbbbbeeebeee------:
Contact : bbbb bb bb b b bbbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acj_B_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TT EEE SS HHHHHHHHHHHHHHHSSS S SSS SHHHHHHHTTTTT TTTTTTTHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeeebeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebeebbbebbebbebeeebbeeebeebbebbbebbeebe:
Contact : bbbb bbb bbbbb b b bb bb bb b bbbb b b b bbb b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acj_B_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHTTT STTHHHHHHHHHHHHHHHHHHHHHTS SSSS SSTTHHHHH STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:
ExpBur :eebeeeeeebeebbebbeebbeeeeebeeeeeeeeebebeebeebeeebeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbb:
Contact : b bb b b b b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acj_B_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : SSSSSSSS EE EE SSEEE EE EE BB SS BSSSBB SSS BSTT SSS SSSS SBSSS SS :
ExpBur :bbeeeeebeebebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbebeeeebbbbbeeeebbeebeebeeebeeeebeeeeeeeebebebee:
Contact : b
queryA 1118:TV:1119
:**:
6acj_B_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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