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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1029 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | BA 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 357N (identity: 100.0 %/94.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h14_B_1 identity=94.0% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** *****************************************************: 8h14_B_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEEESS EE SS S EEEEEEEE TTEEEEEE ------- EE S EEEEEEESS EEEEEEESS STTS EEEEEE SS EEEEEE E: ExpBur :eebebbebbbbbeeeeebbeeeeebeebbbebeeebebee-------eeebebeebbbbbbbbeeebbebbbbbbebeeebebbbbbeeeebebbebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :******** ******************* ***************************************************: 8h14_B_1 121:ELCDNPFFXXXXXXXXXXXTMIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220 SecStr :EE SS B ----------- SEEEE S EEEE ----------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEEEEEE E: ExpBur :ebbeebee-----------eebeeebeeeeeeeeeeee-----------eebebbbbbeeeeebebbebeeebeeeeebbeeebbbeeeeebebebebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :******* **********************************************************************************: 8h14_B_1 221:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEE ----------- EEEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHT S SEEEE EEEEE SB HHHHHS: ExpBur :bbbbeee-----------ebbbbbbebeebebbbebeeebebeebbbbeeebbbebebeeeeeebeebeeebeebeeeeeeebbbbbeeeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*********************************************************************************** ****************: 8h14_B_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPCDFMGCVLAWNTRNIDA: 420 SecStr : S BSTT EEEEE SEE GGGGGTT SEEEEESS GGGTTS EESSEEEEEEEEEGGGGGGSSTT SHHHHHT SS EEEEEEE HHHH : ExpBur :eeebbbbbbbeeeebeebbeeeeebeeeeeeeeeeeeebeeeebeebbbbebebbbbbbeeebbebbbeeeeeebbbebbebbeebebbbbbbebeeebb: Contact : b queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h14_B_1 421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr : SS B EEE SS TT B SSS SSSSS B SEEE B SSS GGGSEEEEEEEE BSSS EE S SSEEEEEET: ExpBur :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbebbebeeeebbbbbeeeeeebeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :************************************************************************* ************: 8h14_B_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCXXXXXXXXXXXXXXXWRIYSTGNNVFQ: 620 SecStr :TEEEEEEEEE TT EEE TT EEEEE SSS EEEEE S EEEEE TTT S EEEESS --------------- S S EE: ExpBur :beeeebbbeeeeeebeeeebbeeeeeeebbbbbbeeeeebbebeebeebebbbbbbbeeeeeeebbbbeebee---------------eebeeeeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ***********************************************************: 8h14_B_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SS EEES EE SS SEEEETTEEEEEE --------- EEEEEE SSEEEEEEEEEEEEEEEEEE EEEE HHHHHSTT HH: ExpBur :beebbbbebeeeeeeeeeebebeeebbbbbee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :****************************************************************************************************: 8h14_B_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 820 SecStr :HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE GGGS SSSSSSS HHHHHHHHHS SSSSS HHHHTT SSS : ExpBur :beebbeeeeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeebbebbbbbbeebeeeeeeeeeeeeebeeeeeeee: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h14_B_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr :HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHTTTTTTTSS HHHHHHHHHHHTT THHHHHSHHHHHHHHHHHHHHHHHHHHS STTHHH: ExpBur :ebbebeeebbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebbeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************** *************************************************************: 8h14_B_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHGGG SSSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebbeebeebbbebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbeebeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h14_B_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEE S EEETTEEEEESSSEEEE SSSEEEE SSS EE BTTTEEE S TTSSTT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbbeeebbeeeebbbbeeeeebebbbeebeeeeebbeeebeeeeeeeeeeeeeeeebeeee: |