Protein Model on 8h11_B_1_A_1
(TEMPLATE: 
8h11
)Protein Model on 8h11_B_1_A_1
(TEMPLATE: 8h11
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (A) | polymer(polypeptide(L)) [979 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | A 1 (B) | polymer(polypeptide(L)) [992 aa] | Spike glycoprotein :SPIKE_SARS | 304N 306R 368G 369V 370S(C) 373K 377L 383Y 417M 449R 450P 451F 452E 453R 455I 456S 502E 503L 504L 505N 533T 535T 543K 544R 545F 546Q 548F 549Q 550Q 551F 552G 553R 555V 556S 557D 558F 574S 575P 577S 578F 600D 630Q 631T 651P 653G 654A 655G 681L 683A 684D 685S 687I 688A 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 947Q 950S 951N 952F 953G 984Q 988T 992Q 999E 1021R 1022V 1023D 1028G 1054E 1056N 1059T 1061P 1071F 1072P 1089R 1105S 1110V (identity: 98.8 %/89.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h11_B_1 identity=89.4% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** *****************************************************:
8h11_B_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr : EEEETT EE SS S EEEEEEEE TTEEEEEE ------- EE SS EEEEEEESS EEEEEE SSSSTTS EEEEEE SS EEEEEEEE:
ExpBur :eeeebbebbbbbbeeeebeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeebbbbebeeeeeeebbebbbb:
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
:** ************ ************************ ***********************:
8h11_B_1 121:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIXXXXDLPSGFNTLKPIFKLPLGINITN: 220
SecStr : ---------------------- EEEEEEEEEE ------------- EEEEEEEEEETTEEEEEEEEE ---- EEEEEEEE E:
ExpBur :ee----------------------eeeeeeeeeeee-------------ebbebbbbbeeeeebbbbebeeee----ebeeeebbbeeeeebebebebee:
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:****** *********************************************************************************:
8h11_B_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr :EEEEE ------------- EEEEE EEEEEEEEE SSSSEEEEEETTS HHHHHHHHHT S SEEEEEEEEEB EEEE B SHHHHS:
ExpBur :bebeee-------------ebbbbbbbeebebbbebeeeeebeebbbbebebbbbbbbeeeebebeebeeebeebebeeeeebbbbeeeeeebebeebbe:
Contact : b b
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:*************************************** *********************************************************** :
8h11_B_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDX: 420
SecStr : S SSS EEEEE SEE HHHHT S SEEEEESS GGGGGT BS EEEEEEEE STTGGGSSTT SHHHHHT TT EEEEEEE TT -:
ExpBur :eeebbbbeebeeeebeebebebbebeeeeebeeeebeebeeeebbeebbbbbebbbbbbbbebeebbbeeeeeebbbebbbbbeebebbbbbbebeeee-:
Contact : bbb b b b b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
: ************************** ********** *****************************************:
8h11_B_1 421:XXXXXXXYKYRYLRHGKLRPFERDISNVPFSPDXXXXXXXXXXCYWPLNDYGFXXXXXXGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr :------- EEE SS TT ---------- EEE ------ EEEEEEEE SSSS EE S SSEEEEEET:
ExpBur :-------eebbeeeeeebeeeeebeeeeebeee----------eeebbeebee------eeeebbbbbbbbeeeeeebbbbbeeeeeeeeeeebbebbbb:
Contact : bbbbb bb bbbb
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h11_B_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620
SecStr :TEEEEEEEEE TT EEE TTS EEEEE TTT EEEEE EEEEEEEES TTT S EEEEET HHHHHHHHHTT BSS SS TT EEE:
ExpBur :eeeeebebeeeeeebeeeebebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeeeeeebbbbeebebeebbebbeeeebebebeeeebeeeeee:
Contact : b b bbbb bbbbbb bbbb bb bb b b
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h11_B_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr : SSEEEES EE S SEEEETTEEEEEE -------- EEEEEE S SSEEEEEEEEEEEEEEEEEE EEEE HHHHHTTT HH:
ExpBur :bebbbbbebeeeeeeeeeebebeeebbbbbee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee:
Contact :b b bbb b bbb bbbbb bbb b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:******************************************************************************** :
8h11_B_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXXXXXXXXXXXXXXX: 820
SecStr :HHHHHGGG SSHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE GGGS TTSSSSS HHHHHHHHH --------------------:
ExpBur :beebbeeeeeebeebeeebeebbebbbebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeebbebbbbbbeebee--------------------:
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
: *************************************************************************************************:
8h11_B_1 821:XXXAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr :--- TT EEEE SS HHHHHHHHHHHHHHHHHHTT SSSSS HHHHHHHHHHHTT HHHHHHSHHHHHHHHHHHHHHHHHHHHS STTHHH:
ExpBur :---eeeebbeeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebbeebeeeeeebeeb:
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:************************************ ***************************************************************:
8h11_B_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebbeebeebeeebeeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbeebeeeebbbeeeb:
Contact : b b b bbbb b b b b bbb b
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h11_B_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSSEEEESSSEEEE SS EEEE SSS B BSTTEEE S TTSSTT EE B :
ExpBur :bbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeebeeeeeeeeeebeeee:
Contact : b b b b bb b b b
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