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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1039 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [1039 aa] | Spike glycoprotein :SPIKE_SARS | 42Y 44D 45E 46I 47F 110K 160T 191D 192G 193F 217K 221K 223P 224L 225G 227N 269N 352Y 353S 356Y 357N 360F 361F 362S 364F 370S(C) 371A 372T 375N 414D 415D 489I 719D 721N 722M 727D 733N 737Q 738Y 740S 741F 744Q 747R 768K 769Q 770M 771Y 772K 779F 815F 816M 817K 818Q 819Y 822C 826I 829R 836K 837F 843L 844P 845P 846L 848T 851M 855Y 865T 866A 868W 871G 872A 874A 876L 877Q 879P 880F 882M 886Y 895Q 896N 899Y 900E 945V 948L 949S 957S 958V 960N 961D 963L 964S 965R 966L 967D(C) 976D 987Q 994L 1001R 1012S 1013E 1021R (identity: 98.0 %/94.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h0x_B_1 identity=94.9% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :****************************************************************************************************: 8h0x_B_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEEESS EE SS S EEEEEEEE TTEEEEEEE SS EE S EEEEEEESS EEEEESS SSSS EEEEEE SS EEEEEEEE: ExpBur :eebebbebbbbbeeeeebbeeeeebeeebbbbeeebebebeeeeeeebeebebeebbbbbbbbeeebbebbbbbbebeeebebbbbbeeeeeebbebbbb: Contact : b bbbb b queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :********* ******************* ****************************************************: 8h0x_B_1 121:ELCDNPFFAXXXXXXXXXXTMIFDNAFNCTFEYISDAFXXXXXXXXXXFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220 SecStr :EE SS EE ---------- SEEEEEEEEEEEE ---------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEEEEEE E: ExpBur :ebeeebebe----------eebeeeeeeeeeeeeeeee----------eeebebbbbbeeeeebbbbebeeebeeeeebbeeeebbeeeeebebebebee: Contact : b bbb b b bbb b queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :******* **********************************************************************************: 8h0x_B_1 221:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEEE ----------- EEEEEE EEEEEEEEE SSS EEEEEETTSSHHHHHHHHHT S SEEEE EEEEE SB HHHHHS: ExpBur :bbbbbee-----------ebbbbbbebeebebbbebeeebebeebbbbeeebbbebbbeeeebebeebeeebeebeeeeebebbbbeeeeeebebeebbe: Contact : b queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*************************************** ************************************************************: 8h0x_B_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 420 SecStr : S STT EEEEE SEE GGGGTT SEEEEESS GGGTTS EESSEEEEEEEEEGGGGGGSSTT SHHHHHT TT EEEEEEE HHHH : ExpBur :eeebbbbbebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbeebbebbbeeeeeebbbebbebbeebebbbbbbebeeebb: Contact : bb bb bbb b bbb b bb queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h0x_B_1 421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr :BSS EEEEEEE SS TT B SSSS SSSSS B SEEEEEEBSSS GGGSEEEEEEEE BSSS EE S SSEEEEEET: ExpBur :eeebbeebebbeeeeeebeeeeebeeeeebbeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbebbebeeeebebbbeeeeeeeeeeebbebbbb: Contact : b queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :************************************************************************* ************: 8h0x_B_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCXXXXXXXXXXXXXXXWRIYSTGNNVFQ: 620 SecStr :TEEEEEEEEE TT EEE TT EEEEE SSS EEEEE S EEEEE TTT S EEEESS --------------- S S EEE: ExpBur :beeeebebeeeeeebeeeebbeeeeeeeebbbbbeeeeebbebeebeebebbbbbbbeeeeeeebbbbeebee---------------eebeeeeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h0x_B_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SS EEES EE SS SEEEETTEEEEEE -------- EEEEEE SSEEEEEEEEEEEEEEEEEE EEEE HHHHHSTT HH: ExpBur :beebbbbebeeeeeeeebebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: Contact : b bb b queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :****************************************************************************************************: 8h0x_B_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 820 SecStr :HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE SSSS SSSSSSS HHHHHHHHHS S SSS HHHHHH SSS : ExpBur :beeebeebeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeeebebbebbbeebeeeeeeeeeeeeebeeeeeeee: Contact : b bb bb b b bbbbb b bbbbb b b b queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h0x_B_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr :HHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHTTTTTTTSS HHHHHHHHHHHTT HHHHHHSHHHHHHHHHHHHHHHHHHHHS STTHHH: ExpBur :ebbebeeebbebeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebeeebeeeeeebeeb: Contact : bb bbbb b b b bb b bb b bb bb b b bb bb queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************ ***************************************************************: 8h0x_B_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHGGG SSSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebbeebeebbeebeeebeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbeebeeeebbbeeeb: Contact : b bb bb bb bbbbb b b b b bb b queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h0x_B_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEEESSSEEEE SS EEEE SSS B BTTTEEE S TTSSTT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbbeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeeeeeeeeeeeeebeeee: |