Protein Model on 7sg4_B_1_A_1
(TEMPLATE: 
7sg4
)Protein Model on 7sg4_B_1_A_1
(TEMPLATE: 7sg4
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1095 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [1095 aa] | Spike glycoprotein :SPIKE_SARS | 42Y 44D 45E 46I 47F 48R 217K 218P 269N 270G 719D 721N 722M 727D 737Q 738Y 739G 740S 741F 744Q 747R 769Q 770M 771Y 772K 779F 829R 836K 837F 838N 839G 845P 846L 847L 848T 851M 854A 855Y 865T 868W 872A 875A 876L 877Q 878I 879P 880F 882M 886Y 894T 895Q 896N 899Y 900E 902Q 945V 987Q 991T 994L 995I 1001R 1012S 1013E 1123L 1126E (identity: 100.0 %/99.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7sg4_B_1 identity=99.8% |
queryA 35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134
:****************************************************************************************************:
7sg4_B_1 35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134
SecStr : S EE S SSEEEEEEEEE TT EEE BTTB EE TT EEEEEEESS S EEEEESSSSSSS EEEEEE SSSEEEE S TT:
ExpBur :ebebbbbbbeeeeeeeeeeebebbbbbbeeebeeeebeeeeebbeebebeebbbbbbbbeebbbebbbbbeebeeeeebbbbbbbeebbbbbbbbbebee:
Contact : b bbbbb
queryA 135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234
:****************************************************************************************************:
7sg4_B_1 135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234
SecStr :STT STTBTTTB TT S S EEE SSGGGGG SSSSSS EEEEEEEEEETTEEEEEEEEEE S SSS EEEEEEEE SEEEES:
ExpBur :ebeeeeeeeeeeeeebbbbbeeeeeeeeeebeeebeebeeeeebbebbbbbbbbeeeeebebbbbbeebeeeeebeeeebbbeeebebebebebeebbbb:
Contact : bb
queryA 235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334
:****************************************************************************************************:
7sg4_B_1 235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334
SecStr : TT TTS SSSS TT EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEE SEEEE B THHHHT S :
ExpBur :bbebebeeeeebbbbbbbbbbebeebebbbebeeeeebeebbbbebebbbbbebeeeebebbebeeebeebeeeeeeebbbbeeeeeebebeebbeeeeb:
Contact : bb
queryA 335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434
:****************************************************************************************************:
7sg4_B_1 335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434
SecStr : TTT EEEEE S B THHHHHH SEEEESSS HHHHTTSEESEEEEEEEEEETTTGGGSSTT HHHHHHT TT EEEEEEESTTT TT :
ExpBur :bbbebbeeeeeeebbbebeebeeeeebeeeeeeeeebeebbeeebbbbbbbbbbbbbebbeebbbeeeeebbbbbbebbeebebbbbbebbeeebeeeeb:
queryA 435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534
:****************************************************************************************************:
7sg4_B_1 435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534
SecStr : TT B STT TTTTT SSS STT SSSTTS B TTS TTTSEEEEEEEEEE SS EES TTSEEEEESSS EE:
ExpBur :beebebbbebeeeeeebbbbbeebbbbeeeeebeeeeeebeeeeeebeeeeeeeeeebbbbbbbbbbbeeeeeeebbbeeeeeeeeeeebbebebeeeee:
queryA 535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634
:****************************************************************************************************:
7sg4_B_1 535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634
SecStr :EEEEEE TT EEE TT EEEEE TTSS EEEEE EEEEEEEE TTT S EEEEES HHHHSSS SS GGGSTTS EETTE:
ExpBur :ebbbbeeeeebeeeeeebeeeeeeebbbbbeeeeebbebeebeebbbbbbbbbbeebeebbbbbeebebeebeeebeeeeebebeebebbbbbeeebeeb:
queryA 635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734
:****************************************************************************************************:
7sg4_B_1 635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734
SecStr :EEES EE SS SEEEETTEEEEEE GGGGGGG EEEEEE S SSEEEEEEEEEEEEEEEEEE EEE HHHHHHTT HHHHHH:
ExpBur :bbbbbbebeeeeeeebebeeebbbbeeeeeeeeeeeeebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbbbebeebbbeebeebeeb:
Contact : b bb b
queryA 735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834
:****************************************************************************************************:
7sg4_B_1 735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834
SecStr :HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHTT SS S EETTEE TTTSB TTSSS BHHHHHHHHHS SSSB TTS SBSS TTTTTS:
ExpBur :beeeeeeeeebeeebeebbebbbebbeebbeebeeebeeeeeeebebbebeebbbeeeeeeebbebbbbbbebbbbbebbebeeeeeeebeeeeeeebee:
Contact : bbbbb b b bbbb b b
queryA 835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934
:****************************************************************************************************:
7sg4_B_1 835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934
SecStr : TTSSEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHH:
ExpBur :beeebbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeebeeebbeebeebbeebeeebeeebeebeebbebb:
Contact : bbbb bbbb b bb b b b bbbbbb b b bbb bb b
queryA 935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034
:********************************* *****************************************************************:
7sg4_B_1 935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034
SecStr :HHHHHHHHHHHHHHH TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTTSSSSEEEEEE:
ExpBur :eebbebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbeebeeeebbbeeebbbbb:
Contact : b b b bb b bb
queryA 1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129
:***********************************************************************************************:
7sg4_B_1 1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129
SecStr :EEEETTEEEEEEEEEEEEEEEEEEEES EE SSSEEEESSSEEEE SS EEEE SSS B BTTTEEEES TTSSTT EE B TTHHHHT :
ExpBur :bbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbebbeeeeebbeebbeeeeeeeeeeeeeeeebeeeeeeeeee:
Contact : b b
|
[assembly_id:1]
[help]