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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1026 aa] | Spike glycoprotein :SPIKE_CVHSA | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [1052 aa] | Spike glycoprotein :SPIKE_CVHSA | 301Q 304N 306R 535T 543K 544R 545F 548F 549Q 550Q 551F 552G 553R 555V 557D 558F 573I 574S 575P 578F 599Q 632Q 633A 651P 653G 654A 655G 656I 657C 679M 681L 683A 684D 685S 687I 688A 689Y 690S 693T 694I 695A 939Q 943T 950S 951N 952F 953G 977R 984Q 988T 992Q 995I 999E 1021R 1022V 1027K 1029Y 1056N 1059T 1061P 1071F 1076V 1089R 1103F 1105S 1112I (identity: 100.0 %/92.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6nb6_B_1 identity=92.2% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :**** ************************************************ ****************************************: 6nb6_B_1 37:RCTTXXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136 SecStr : ------- EEEE TEEEEE SS SEEEEEEEEE TT EEEEEEEETTEE EEE TTEEEEEEEESS EEEEEEESSSSTTS EEEEE: ExpBur :eeee-------eeeebebbebbbbeeeeeebeeeeeeeebebbebebebebbeeeeeeebeeeeebeebbbebbbbeeebebebeebeeeeeeeebeeee: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :******************** ********************** ****************************************: 6nb6_B_1 137:NNSTNVVIRACNFELCDNPFXXXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236 SecStr :E SSSEEEEEEEEEE SS ---------- SEEEEEEEEEEEE -------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEE: ExpBur :eeeebeeebbbbbbebeeee----------eeebeeeeeeeeebeeeeeeee--------ebebeebbbebebeeeeeebeeeeebebeeeeeeeeebbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :******************* *********************************************************************: 6nb6_B_1 237:PIFKLPLGINITNFRAILTXXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336 SecStr :EEEEE SEEEEEE ------------ EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEE : ExpBur :eeeeeebeeeeebbbebee------------eeebbebebbebebbbebeeebebebbbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbee: Contact : b b b queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 6nb6_B_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436 SecStr :S B HHHHT S BSTT EEEEE SEE HHHHT SS SEEEEESS GGGGGG BS EEEEEEEEEGGGGGGSSBT SHHHHHT B SS E: ExpBur :eeeeebeeeeeeeeeebebbbebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebebebeeebbbeeeeeebeeeeeeeebbebbbbeeeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************** *********** *********: 6nb6_B_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFXXXXXXXXQPYRVVVLSFEXXXXXXTVCGPKLST: 536 SecStr :EEEEEEE TTTT TT TT EEE SS TT B TTS TTSTT B SEEE -------- EEEEEEEEE ------ EE : ExpBur :beeebbebeeebeeeeebeebebbeeeeeebeeeeeeeeeeebeeeeeeeeeeeeebeebeeebeb--------ebbbebeeeee------ebeeeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 6nb6_B_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636 SecStr : TTSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEEETS HHHHHHHHHTT EES: ExpBur :eeeeeebbebebeebeeebbbeeeeeebeeeeeeeeeeeeeeebbebeeeebbbbbeebeebbbbbbbbbeeeeebebbbbeebebeebeebeeeeebee: Contact : b bbb bbbbbb b bb bbb b b queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** ***********************************************: 6nb6_B_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736 SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEE EEEEEEEEEEE EEE: ExpBur :ebeeeeeeeeeeebeebbbbebeebeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: Contact : bb b bbbbb b b bbb bbbb bbb queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************* : 6nb6_B_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836 SecStr :E HHHHH SS HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SS S BTTB TTTSB TTSS SBHHHHHHTT ---------: ExpBur :bebeebbbeebeebeebbeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeebebbebeebbbeeeeeeeebebbbbbbeee---------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 : ***********************************************************************************: 6nb6_B_1 837:XXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936 SecStr :----------------- TT EEEE SS HHHHHHHHHHHHHHHHHSGGGTTTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHH: ExpBur :-----------------eeebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6nb6_B_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036 SecStr :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S THHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeeeeeebeebeebeeebeebeeebeeebeeeeebeeeebebbeeeeeeeebbebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb: Contact : b b bbbb b b b b b b queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6nb6_B_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136 SecStr : STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EEETTEEEEESSSEEEEETTEEEEE TTS B BGGGEEEEEETTS TT EE : ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbeebbeeeebbeeebeeeeeeeebeeeeee: Contact : bb b b b b b b b b b b b queryA 1118:TVYDPLQPEL:1127 :**********: 6nb6_B_1 1137:TVYDPLQPEL:1146 SecStr : B THHHH : ExpBur :ebeeeeeeee: |