Protein Model on 6cs1_B_1_A_1
(TEMPLATE: 
6cs1
)Protein Model on 6cs1_B_1_A_1
(TEMPLATE: 6cs1
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (C) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
| 2 | b | A 1 (B) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | 42Y 45E 46I 47F 48R 218P 269N 719D 721N 722M 727D 737Q 738Y 741F 744Q 758R 768K 769Q 770M 771Y 772K 818Q 822C 824G 831L 833C 835Q 836K 837F 838N 841T 844P 845P 846L 848T 851M 855Y 865T 866A 868W 869T 871G 872A 875A 876L 877Q 878I 879P 880F 882M 894T 895Q 896N 899Y 902Q 984Q 987Q 991T 994L 1001R 1013E 1016L 1021R 1095Q 1100D (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6cs1_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6cs1_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr : EEE S EE SS SSEEEEEEEE TT EEEEEESTT S EE TT EEEEEEESS EEEEEEESSSSTTS EEEEE:
ExpBur :eeeebeeeeeeeeeebebbbbbbbbbeeeeeeeeeeeeeebbbbbeeebebbbbeeebbbbeebebeebbbbbbbbbbebbbbbbbbeebeeeeebbbbb:
Contact : b bbbb
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6cs1_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr :E SS EEEEEEE B SS EEEEETTT EEE TTBS EEEEEEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS EEE:
ExpBur :bebeeebbbbbbbebbebbbbbbbbeeeebeeebbeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbbeeeebbbbebeeeeebeeebeeeebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:*********************** **************************************************************************:
6cs1_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr :EEEEEE EEEEEEEEEE --- B SEEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT S SEEEEEEEEEE EEE S:
ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeebebeebeeebeebebeeeeebbbbe:
Contact :b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:************************************************** ***********************************************:
6cs1_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr :S HHHHS S SS B EE SS HHHHS SSBS EE --- TTTTS BS EE EEEEE HHHHTT SSB TTTIIIII BB SSS :
ExpBur :eebeeeeeeebbebeebebbbebeeeebeebbbebeebeeeeebebbebe---eeeeeebeeeebbbbbbbbbbebbebbbeeeeeebbbbbbebbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:************************************************************************************* *********:
6cs1_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr : EEEEEE HHHH TT B S EEE SS BS S TTS SSSTT SEEE B SSS GGGS EEEEE B ------ B SS :
ExpBur :bbbbbbebeeebbeeebbeeeebbebeeeebeebeebeeeeebbeeeeebeeeeeebeebeeebebebeeeeeebbbbbbbbbbe------ebbbebeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:*********************************************************** ****************************************:
6cs1_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr : SSEEEEE SS EEEEEEEE TT SEEE SSSSEEEEE TTT EEEEE EEEEEEEES TTT S EEEEET HHHHHHHHHTT EES:
ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbebeeeeeebebeebeebbbbbbbbbeeebeebbbbbeebebeebeebbeeebeee:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************* **********************************************:
6cs1_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr : SS TT EEEETTEEEESSEEEEEEE SEEEETTEEEEEE --------- EEEEEEE S SSEEEEEEEEEEEEEEEEE EE:
ExpBur :eeeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbbee---------eebbbbeeeeeeeeeeeeeeeebebbeebebebeeebbbbbbebbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************** :
6cs1_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr :E HHHHHTSS HHHHHTTGGG SHHHHHHHHHHHHHHHHHHHHHHHHTT SS S B SS B TTTS TTTT SS HHHHHHHHTT --------:
ExpBur :bebebbbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeeeeeeeeebbebeebbbbeeeeeeebebbeebbeebe--------:
Contact : b bb b bb b b b bbbbb
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:******* ***************************************************************************************:
6cs1_B_1 805:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr : BEEE ------ EEE SS EEE SS HHHHHHHHHHHHHHHTTSTTHHHHSS HHHHHHHHHHHHT THHHHHTTTHHHHHHHHHHHHHH:
ExpBur :eebeeee------eeeeeeeebbebeeeeeeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeebeeebbeebbebbeebb:
Contact :b b b b b bbbb b bbb b b b bb bb bb bbbbbb b bbb b b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6cs1_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr :HHHHS STTHHHHHHHHHHHHHHHHHHHTTS TTSS SSSHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS:
ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebeebeebbeeeeeeebeeebeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbe:
Contact : b b b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6cs1_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr : TTSSSSSSEEEE EEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS B SSSEEE S SSSSSS B :
ExpBur :ebeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebeebbbbeeebbeeeeebbbeeeeeebbbbeebebeeebbeebbeeeeebeeeeeebee:
Contact : b b b
queryA 1118:TVY:1120
:***:
6cs1_B_1 1105:TVY:1107
SecStr : :
ExpBur :ebe:
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[assembly_id:1]
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