Protein Model on 6acj_B_1_A_1
(TEMPLATE: 
6acj
)Protein Model on 6acj_B_1_A_1
(TEMPLATE: 6acj
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | 304N 306R 342R 368G 369V 370S 373K 377L 416F 444R 449R 450P 451F 452E 453R 454D 455I 456S 503L 505N 533T 543K 544R 548F 549Q 550Q 551F 552G 553R 556S 557D 558F 559T 573I 574S 575P 578F 600D 632Q 651P 653G 654A 655G 679M 681L 683A 684D 685S 686S 687I 689Y 691N 693T 694I 695A 697P 943T 947Q 950S 951N 952F 953G 984Q 988T 991T 995I 999E 1021R 1022V 1023D 1027K 1028G 1029Y 1051P 1061P 1071F 1072P 1074E 1075G 1076V 1077F 1089R 1103F 1105S 1110V (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acj_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acj_B_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S EEE TT SS SS EEEEE TT EEEEEEE TT EE SS EEEEEE SSS S EEEESSSSTT EEEEEE:
ExpBur :eebebeeeeeeeebeeebbebbbbbeeeeeeeeeeeeeebebbbbebebebbebeeeebbbeebebeebbbbbbbbbbebbbbbbbbbebeeebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acj_B_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSEEEEEEEEE SS EEEE TTT TT SSEEEEEEEEEEEE S SSBT EEEEEEEETTEEEEEE B SSS S E:
ExpBur :beeebbbbbbbbbebbebbbbebeeeeeeeeeebeeeeeeeeeeeeebeeeebebbeeeeebeebbbbbbbeeeeebbbbebeeebeeeeeeeebebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acj_B_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEEE EEE EEEE ---- SEEEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT SS SEEEEEEE B SEEE :
ExpBur :eeeebebeeebeebebbbbbbe----ebbbbebbbbbbebeebebbbebbeebebeebbbbebebbbebbbeeeeeebeebeeebeebebeeeeebbbbb:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acj_B_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr :S B THHHHTS S STT EEEEE S B TTTSS SEEEESSS SGGGGGS BS EEEEEEEE SSTTTT SSS SHHHHH SSS :
ExpBur :eeeeebebeebbeeeebbbbeebeeeebeebebebeeeeeeeeeeeeeeeeeeeeebeeebbbbbbbbbbbbbbebbebbbeeeeeeebbebbbbbeeeb:
Contact : b bbb b b b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acj_B_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTS TT S B SS SS B TT TTSTT B B SS GGGS EEEEEEEE TT SS BB S :
ExpBur :bbbbbbbbeeeebeeebbeeeebbeeeeeebeeeeeeeeeeebbeeeeebebeeeebeebeebbebeeeeeeeebbbbbbbbbbeeeebebbbbbeeeee:
Contact : b bbbbbbbb b b
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acj_B_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : TTS EEEE SS EEEEEEEE S TT TTTS EEEETTTEEEEEE EEEEEEEE SSS EEEEEE SSHHHHHHHTT BSS:
ExpBur :eeeeeebbebbbbeeeeebebeeeeeeeeeeebeeeeeeeeeebbebeeeeebbbeeebbebbbbbbbbbbeeeeebbbbbeebebeebeebbeeebbeb:
Contact : b bb bbbbbb bbbb bbb b b
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acj_B_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS B SSS EES B SS SSB SSS EE ------------- BEE S SS B SEE B EEE EE:
ExpBur :ebeeeeeebebeeeeebbbbebeeeeeeeeeebebeeebbbee-------------ebbbeebeeeeeeeeeeeeeeebebebebebeeebbbbbbbbbe:
Contact : b b bbb b b bbbbb b b bbb b
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acj_B_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E STTTS SHHHHHHHHT THHHHHHHHHHHHHHHHHHHHHHHHTT SS S STT TTTS TTSSS S HHHHHHHHH ------:
ExpBur :bebeebbbeeeeebeebbeeeeeeeeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbbbbeeebeee------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acj_B_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TT EEE SS HHHHHHHHHHHHHHHSSS S SSS SHHHHHHHTTTTT TTTTTTTHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeeebeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebeebbbebbebbebeeebbeeebeebbebbbebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acj_B_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHTTT STTHHHHHHHHHHHHHHHHHHHHHTS SSSS SSTTHHHHH STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:
ExpBur :eebeeeeeebeebbebbeebbeeeeebeeeeeeeeebebeebeebeeebeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbb:
Contact : b b bbbb b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acj_B_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : SSSSSSSS EE EE SSEEE EE EE BB SS BSSSBB SSS BSTT SSS SSSS SBSSS SS :
ExpBur :bbeeeeebeebebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbebeeeebbbbbeeeebbeebeebeeebeeeebeeeeeeeebebebee:
Contact : bbb bbb b b bb bbbb b b b b
queryA 1118:TV:1119
:**:
6acj_B_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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