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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6cs0_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6cs0_A_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : SS B EEEEE S B SS SEEEEEEEEE SSEEEEEEEE TTB S EE TT EEEEEEESS EEEEESSSSSSS EEEEE: ExpBur :ebeebeeeeeeeebeeebbebbbbbbeeeeeeeeeeebebbbbbbebebebbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbeebeeeeebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6cs0_A_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEEEEE SS EEEETTTTEEEE TTEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEE EEEESSS BE: ExpBur :bebeebbbbbbbbebeebbbbbbeeeebebeeebbbeebeeeeeeeebeeeeeebeeeeeebeebbbbbbbeeeeebbbbebeeebeeeebbeebeebbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6cs0_A_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEE S EEEEE EEE --- EEEEEEE EEEEEEEEE TTS EEEEEESSS HHHHHHHHHT SS SEEEEEEEEEE EEE S: ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeebebeebbbbebebbbebebeeeeeebeebeeebeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6cs0_A_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr : HHHH STT EEEEE S HHHHS SS EE --- GGGG SSS EEEEEEEE GGGTTT SBS STTTTTT B SS : ExpBur :eeeeebebebbbeeeebebbbebeeeebeebbbebeebeeeeebeeeebe---eeeeebbbbebbbbbbbbbbeebeebbbeeeebebbbbbbbbbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6cs0_A_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEE B TTTS BTT TTSEEE SS SS S TTSSS TTSTT SEEE BSSS GGG EEEEEEEE ------ SS : ExpBur :bbbbbeebeeebbeeebbeeeebbeebeeebeeeeebeeeeebeeeeeebebeeeebeebeeebbbeeeeeeeebbbbbbbbbbe------ebbbebeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6cs0_A_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : TTSEEEEEETTEEEEEEEEE TT EE SSSS EEE TTT EEEEE EEEEEEEE TTT S EEEEES HHHHHHHHHTT EES: ExpBur :ebeeeebbebebeebeeebebeebeeebeeeeeebeeeeeebbbbbbbeeeeebebeebeebbbbbbbbbeeeeeebbbbbeebebeebeebeeeeebee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 6cs0_A_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS S EEE SSEEEESSEEEEEEE SEE SSSEEEEEE --------- EEEEEEE S TT EEEEEEEEEEEE EEE: ExpBur :ebeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbbbbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6cs0_A_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E HHHHTTSS STTHHHHTTT SHHHHHHHHHHHHHHHHHHHHHHHH SS S BSSS B TTTS TTSSS HHHHHHHHHH --------: ExpBur :bebeebbbeebeebeebbeeeeeeeeebeeebeebbeebeebbeebbeebeeeeeebeeeebeebebebbbbeeebeeebbebbeebbeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :******* ***************************************************************************************: 6cs0_A_1 805:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : B ------ SS EEEE SS HHHHHHHHHHHHHHHHHTTHHHHHSS HHHHHHHHHHTTTS THHHHHTHHHHHHHHHHHHHHHH: ExpBur :eebeeee------eeeeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbebbeebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6cs0_A_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHTTS SSS HHHHHHHHHHHHHHHHHHHTTS TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeeeeeeeebeeeebeebeeebeeeebeeebeebbebbbebbeebbeebeeebeebeeebeebbebbeebbeb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6cs0_A_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : SSSSSSSSEEEEE EEETTEEEEEEEEEEEE EEESEEEETTEEEEESSSEEEE SS EEEE SSS B TTSEEEEEESSSSSSEEE : ExpBur :bbeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbbeeebbeeeebbbbeeeeeebbbbebbeeeeebeeeebeeeeebeeeeebeeb: queryA 1118:TVY:1120 :***: 6cs0_A_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |