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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(SPIKE_SARS) | A 1 (B) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6crx_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6crx_A_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : SS EEEE TT EE SS SEEEEEEEEE TT EEEEEEE TT EEE TTEEEEEEEESS EEEEEEESS STTS EEEEE: ExpBur :eeeebeeeeeeeeeebebbbbbbbbeeeeeeeeeeeeeeebbbbbeeebebbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbeebeeeeebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6crx_A_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEE SS EEE: ExpBur :bebebeebebbbbebbeebbbbbeeeebebeebbbeeebeeeeeeeebeeeebebeeeeeebeebbbbbbbeeeeebbbbebeeebeeeeebbeeebbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6crx_A_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE SEEEEEEEEEE --- SEEEEEEE EEEEEEEEE TTS EEEEEESSS HHHHHHHHHT S SEEEEEEEEEE EEEE : ExpBur :eeeebebebebeebbbbbbbbbe---eebbbebbbbbbebeebebbbebeeebebeebbbbbbebbbebebeeeeeebeebeeebeebebeeeeebbbee: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6crx_A_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :SS SB GGGTTS S GGG EEEEE SEE HHHHT S B EE --- THHHH SSEEEEEEEEEHHHHTT SS TTTHHHHT SS : ExpBur :eeeeebebeebbebeebebbbebeebebeebebbbebbeeeeebeeeeee---eeebbebebeebbbbbbbbbbebbeebbeeeeeebbbebbbbbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6crx_A_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEEE TTTT SS BTT EEE SS TT BBTTTB TT TT B SEEE B SSS GGGSEEEEEEEEE ------ EE : ExpBur :bbbbbbbbeeebbeeebbeebebbebbeeebeebeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbee------ebebeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6crx_A_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : TTS EEEEESS EEEEEEEE TT EEE SSS EEEEE TTT EEEEE EEEEEEEES TTT EEEEET HHHHHHHHHTT EES: ExpBur :ebeeeebbebebeeeeeebbbeeeeeebeeeeeebeeeeeebebbbbeeeeebbebeebbebbbbbbbbbbeebeeebbbbeebebeebeebbeeeebee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** **********************************************: 6crx_A_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEESSEEEEEEE SEEEETTEEEEEE -------- EEEEEEE S SSEEEEEEEE EEEEEEE EE: ExpBur :eeeeeebeeeeeeeebbbbbebeeeeeeeeeebebeeeebbbeeee--------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6crx_A_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E SHHHHTSS HHHHHHHGGG S HHHHHHHHHHHHHHHHHHHHHHHTT S S EETTEEGGGTS SSSTT S HHHHHHHTTT --------: ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbbbbbeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****** ***************************************************************************************: 6crx_A_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : B ------- SSSEEE SS HHHHHHHHHHHHHHHTTSGGGGGSSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHH: ExpBur :eebeee-------eeeeeeebbbebeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6crx_A_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHH TTHHHHHHHHHHHHHHHHHHHTSS TTSS SSHHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbe: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6crx_A_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : STBTTBSSEEEEEEEEEETTEEEEEEEEE EEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS EE SSSEEEEEESSSSSS EE : ExpBur :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbbeeebbeeeeeebbeeeeeebbbeeebebeeebeeeebeeeeebeeeeeeeeb: queryA 1118:TVY:1120 :***: 6crx_A_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |