Protein Model on 6acd_A_1 (TEMPLATE: 6acd )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description
1 a A(SPIKE_SARS) A 1 (A) polymer(polypeptide(L)) [1065 aa] Spike glycoprotein :SPIKE_CVHSA
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6acd_A_1 identity=96.6%
queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :****************************************************************************************************:
6acd_A_1      18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr          :     S     S  EEE TT     SSS    S EEEEEEEE  SS EEEEE   TT      EE  S EEEEEEESSS    EEEESSSSTTSEEEEEE:    
ExpBur          :eebeeeeeeeeeeeebebbebbbbeeeeeeeeeeeeebeeebbbbebebebbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :****************************************************************************************************:
6acd_A_1     118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr          :E SSSEEEEEEE    S   EEE SSS         S  EEEEEEEE        S   SSB EEEEEEEEEETTEEEEEEEE  B  SSS   S    E:    
ExpBur          :beeebbbbbbbbbeebebebbebeeeebebeeebbeeeeeeeeeeeebeeeebebeeeeeebebbbbbbbbeeeeebbbbebeeebeeeeebbeeebbbe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :**********************    **************************************************************************:
6acd_A_1     218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr          :EEEEE       EEEE  EEE ----     S EEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT SS  SEEEEEEEEEB   EEEE   :    
ExpBur          :eeeebeeeeebeebebbbbbbe----ebbbbebbbbbbebeebebbbebbeeeebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbb:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :****************************************************************************************************:
6acd_A_1     318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr          :S   B THHHHSS S    STT EEEEE SEE    TTTS S  SEEEESSS SGGGGGS BSSEEEEEEEE SSTTTT SSS   SHHHHT    SSS :    
ExpBur          :eeeeebebeebbeeeebebbbebeeeebeebebebeebeeeeeeeeeebeeeeeeebeeebbbbbbbbbbbbebebeebbbeeeeeebbbebbebbeeeb:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :****************************************************************************************************:
6acd_A_1     418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr          : EEEEEE TTTT  SS BTT EEE   SS   TT    S   B TTS    TTSTT B  EEE  B SSS GGG  EEEEEEE  TTSSS  EE S    :    
ExpBur          :bbbbbbbbeeeebeeebbeebebbeeeeeebeeebeeeeeeebbeeeeeeebeeeebeebeeebebeeeeeeeebbbbbbbbbbeeeeeebbbbbeeeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :****************************************************************************************************:
6acd_A_1     518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr          :   BSS EEEE SS EEEEEEEE      TT      SSS   EEEETTTEEEEEE   SEEEEEEEES SSS S  EEE  S  SSHHHHHHHTT BSS:    
ExpBur          :eeeeeebbebbbbeeeeebbbeebeeebeeeebeeeeeeeeeebbebeeeeebebeeebbebbbbbbbbbbeeeeebbbbbeebebeebeebbeeeebeb:    

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :*******************************************             ********************************************:
6acd_A_1     618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr          :  SS     EE  SSS  EES EEESS  S SEE SSS EE  ------------- EEE    S        SS B   SSEE  EEEEEEE     EE:    
ExpBur          :ebeeeeeeeebeeeeebbbbebeeeeeeeebebebeeebbbbe-------------ebbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbbbbe:    

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :**********************************************************************************************      :
6acd_A_1     718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr          :E TTTSSS S SSHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH   SS     S  EETTEE TTTS  SSSSSSS HHHHHHHHHS   ------:    
ExpBur          :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbbbbeeebeee------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :              **************************************************************************************:
6acd_A_1     818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr          :--------------     TTSEEE   SS HHHHHHHHHHHHHHHHSS S  SSSS     SHHHHHHHTTTTT  THHHHTTHHHHHHHHHHHHHHHH:    
ExpBur          :--------------eeeeeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeebeebbeebbebbeebb:    

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :****************************************************************************************************:
6acd_A_1     918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr          :HHHHS  STTHHHHHHHHHHHHHHHHHHHHHHS SSSSSSSTTTTTTT  STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:    
ExpBur          :eebeeeeeebeebeebbeebbebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
6acd_A_1    1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr          :   STTTSSSS   EEEEEE SSEEEEEEE  EE     B B S  BSSSSEEE  SS  EETTTT EE  SSS       STT EEES TTS SS    :    
ExpBur          :bbeeeebbbebebbbbbbbbbbebbbbbbbbbebeeeeeeebbebbbeeeebbebeeeebbbbbeeeebbeebbebeeebeeeebeeeeeeeebebebee:    

queryA      1118:TV:1119
                :**:
6acd_A_1    1118:TV:1119
SecStr          :  :    
ExpBur          :be:

Input Residue Numbers for Focused Sites

ex) 2,15,123