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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | T 1 (T) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 831L (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6crw_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6crw_A_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : SS B EEEEE EEEEE SS SEEEEEEEEE SSEEEEEEEEBTTB S EE TTEEEEEEEESS EEEEESSSSTTS EEEEE: ExpBur :ebeebeeeeeeeeeeeebbbbbbbbbeeeebeeeeeebebbbbbbebebebbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbeebeeeebbbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6crw_A_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEEEEE SS EEEETTTTEEEE TTEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS EEEEE: ExpBur :bebeebbbbbbbbebeebbbbbbeeeebebeeebbbeebeeeebeeebeeeeeebeebeeebeebbbbbbbeeeeebbbbebeeebeeeeebeebeebbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6crw_A_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEE S SEEEE EEEE --- EEEEEEE EEEEEEEEE TTS EEEEEESSS HHHHHHHHTT SS SEEEEEEEEEE EEEE S: ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6crw_A_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :S HHHH S STT B EE SB GGGTS SS S EE --- GGGG EES EEEEEEEEEHHHHTT SBS SHHHHHT B SSS : ExpBur :eeeeebebeebbeeeebebbbebeeeebeebbbebebbeebeebeeeebe---eeeeeebbbeebbbbbbbbbeebeeebbeeeeeebbbbbbbbbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6crw_A_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEE B TTTS BTT TTSEEE SS SS S TTSSS TTSTT SEEE BTTS GGG EEEEEEEEE ------ EESS : ExpBur :bbbbbeebeeebbeeebbeebebbeebeeebeeeeebeeeeebeeeeeebebeeeebeebbeebbbeeeeeeeebbbbbbbbbbe------ebbbebeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6crw_A_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : TTSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT S EEEEES HHHHHHHHHTT EES: ExpBur :ebeeeebbebbbeebeeebebeebeeebeeeeeebeeeeeebbbbebeeeeeebebeebeebbbbbbbbbeeeeeeebbbbeebebeebeebbeeeebee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 6crw_A_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEESSEEEEEEE SEEEETTEEEEEE --------- EEEEEEE S TT EEEEEEEEEEEEEEEEE EEE: ExpBur :ebeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6crw_A_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr : HHHHTSSS HHHHHHHTTT THHHHHHHHHHHHHHHHHHHHHHHT SS S EETTEE TTTSB TTSSS BHHHHHHHHHH --------: ExpBur :bebeebbbeebeebeebbeeeeeeeeebeeebeebbeebbebbeebbeebeeeeeeeeebebeebebebbbbbeeeeeebbebbbebbeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :******* ***************************************************************************************: 6crw_A_1 805:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : B EE ------ EE SSS EEE SS HHHHHHHHHHHHHHHHHTTHHHHHSS HHHHHHHHHHTTTS THHHHHTHHHHHHHHHHHHHHHH: ExpBur :eebeeee------eeeeeeebbbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbebbeebbeebe: Contact : b queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6crw_A_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHS SSS HHHHHHHHHHHHHHHHHHHGGGS TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS: ExpBur :eebeebeeebeebeebeeebeebbeebeeeeeeeeebebeebeebeeebeeeebeeebeebbebbeebbeebbeebeeebeebeeebeebbebbeebbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6crw_A_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEESEEEETTEEEEESSSEEEE SS EEEEETTEEEEE TTTEEEEEESSSSTTEEE : ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbbeeebbeeeebbbbeeeeebbbbeeebeeeeebeeeebeeeeebeeeeebeee: queryA 1118:TVY:1120 :***: 6crw_A_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |