[pdbjlvh2]Protein Model on 8tc5_A_1_OA

Protein Model on 8tc5_A_1_OA_1 (TEMPLATE: 8tc5 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SPIKE_SARS)	A 1 (A)	polymer(polypeptide(L)) [1087 aa]	Spike glycoprotein
2	b		OA 1 (l)	branched(oligosaccharide)	alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	816M (identity: 100.0 %/97.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8tc5_A_1 identity=97.0%

queryA        16:LDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVI: 115
                :************************************************************* **************************************:
8tc5_A_1       1:LDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVI: 100
SecStr          :  S    SS B    EEEE  S  EE  SS    SEEEEEEEEE  TT EEEEEEEETTEE    EE TT EEEEEEESS    EEEEESSSSTTS EEE:    
ExpBur          :eeeeeebeeeeeeeeeebebbebbbbbbeeeebbeeeeebeeebbbbebebebbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebbbbb:    

queryA       116:IINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNT: 215
                :****************************************************************************************************:
8tc5_A_1     101:IINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNT: 200
SecStr          :EEE SS EEEEEEEEEE SS EEEEETTT  EEEE SEEEEEEEEEEEE        S   SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS      E:    
ExpBur          :bbeebeeebbebbbbebbebbbbbbbeeeeebeeebbeeebeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebebbebeeebeeeeebbeebeb:    

queryA       216:LKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR: 315
                :*********** *********** **** **************** ******************************************************:
8tc5_A_1     201:LKPIFKLPLGIKITNFRAILTAFLPAQDTWGTSAAAYFVGYLKPTKFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR: 300
SecStr          :EEEEEEEE      EEEEEEEEEESBTTB     EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S   SEEEE          EEEE:    
ExpBur          :beeeeebebebebeebbbbbbbbeeeeeebebbebbbbbbebbebebbbebbeebebeebbbbeeebbbebbbeeeebebeebeeebeebbeeeeeebbb:    

queryA       316:FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD: 415
                :**************************** *************** *******************************************************:
8tc5_A_1     301:FPNITNLCPFGEVFNATKFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD: 400
SecStr          :     SB  HHHHHT S   BGGG EEEEE SEE  GGGGGGT   SEEEEESS GGGGGG EESSEEEEEEEEEGGGGGGSSTT  SHHHHHT    TT:    
ExpBur          :bbebeeebebeebbeeeebbbbeebeeeebeebebeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbeebbebbbeeeebebbbebbebbee:    

queryA       416:FMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKL: 515
                :*************************************************************** ******* ****************************:
8tc5_A_1     401:FMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLKDYGFYTTSGIGYQPYRVVVLSFELLNAPATVCGPKL: 500
SecStr          :  EEEEEEE HHHH BSS B   EEE   SS   TT        B TT S   TTSTT B SEEE  BBTT  GGGSEEEEEEEE   SSS   EE S  :    
ExpBur          :bebbbbbbebeeebbeeebbeebebbeeeeeebbeeeebeeeeebbeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbebbebeeeebebbbeee:    

queryA       516:STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQL: 615
                :******************************************************************************************          :
8tc5_A_1     501:STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDXXXXXXXXXX: 600
SecStr          :      SSEEEEEETTEEEEEEEEE      TT  EEE TT  EEEEE TTT  EEEEE S    EEEEES TTT S  EEEETT     ----------:    
ExpBur          :eeeeeeeebbebbbbbeeeebebeebeeebeeeebbbeeeeeebbbbbbeeeeebbebeebeebbbbbbbbbeeeeeeebbbbeebebee----------:    

queryA       616:TPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAK: 715
                :  **********************************************       ****************************** **************:
8tc5_A_1     601:XXAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFLISITTEVMPVSMAK: 700
SecStr          :--    S   SSEEEETTEEEES EE S  B  SEEEETTEEEEEEE ------- EEEEEEEB           SSEEEE  EEEEEEEEEEEE    E:    
ExpBur          :--eeebeeeeeeebebebbbbbebbeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeebebbeebebbbeeebbbbbbbb:    

queryA       716:TSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGF: 815
                :*************************** ********** *********************** *************************************:
8tc5_A_1     701:TSVDCNMYICGDSTECANLLLQYGSFCAQLNRALSGIAVEQDRNTREVFAQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGF: 800
SecStr          :EEE HHHHHHTT HHHHHHHHHHT  HHHHHHHHHHHHHHHHHHHHHHH   SS     S   TTT   GGGS  SSSS SS HHHHHHHHTS  S  SS:    
ExpBur          :bebebeebbbeebeebbebbeeeeeebeebeebbeebbebbbbbbeebbeebeeeeeeeeebeeeebebeebbbeeebeeeebebbbbbbeebeeeeeee:    

queryA       816:MKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQ: 915
                :****************************************************************************** *********************:
8tc5_A_1     801:MKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVAQNVLYENQKQIANQFNKAISQ: 900
SecStr          :   HHHHHHTGGG  HHHHHHHTTEEEE  SS HHHHHHHHHHHHHHHHHT   SSSSS     HHHHHHHHHHHTT  HHHHHHTHHHHHHHHHHHHHH:    
ExpBur          :eeeeeebeeeeeeeeeebebeeebbeeeeeebeeeebbeebbbbbbbbbebbbeeeeeeeeeeebbebbbebbeeeebeeebbeeeeeebbebbeebbee:    
Contact         :b                                                                                                   

queryA       916:IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV:1015
                :****************************************************************************************************:
8tc5_A_1     901:IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV:1000
SecStr          :HHHHHHS   TTHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT:    
ExpBur          :bbeebeeeeeebeebbebbeebeebbeebbeebeeeeebebbebeebeeeeeeebbeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebb:    

queryA      1016:LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGII:1115
                :****************************************************************************************************:
8tc5_A_1    1001:LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGII:1100
SecStr          :SS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEEE  EEEE  S EEETTEEEEESSSEEEE SSSEEEE SSS   EE  GGGEEE S TTTSTT E:    
ExpBur          :bbebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeebbbbeeeeebbeeeeebbbbeeebbeeeebeeeebeeeeebeeeeebe:    

queryA      1116:NNTVYD:1121
                :******:
8tc5_A_1    1101:NNTVYD:1106
SecStr          :E     :    
ExpBur          :eeebbe:

Protein Model on 8tc5_A_1_OA_1 (TEMPLATE: 8tc5 )

Input Residue Numbers for Focused Sites