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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1007 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | O 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 602N (identity: 100.0 %/91.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h12_A_1 identity=91.9% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** *****************************************************: 8h12_A_1 17:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 116 SecStr : EEEE S EE SS S EEEEEEEE TTEEEEEE ------- EE SS EEEEEEESS EEEEEEESSSSSSS EEEEEE SS EEEEEE : ExpBur :eebebbebbbbbbeeeebeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeeeebbebeeeeeeebbebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :** ************ ***************************************************: 8h12_A_1 117:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 216 SecStr : ---------------------- S B B ------------- EEEEEEEEEETTEEEEEEEEEE S SS EEEEEEEE S E: ExpBur :ee----------------------eeeeeeeeeeee-------------eebebbbbbeeeeebbbbebeeeeeeeeebeeeebebeeeeebebebebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :****** *********************************************************************************: 8h12_A_1 217:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 316 SecStr :EEEEE ------------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS SEEEE S EEEE S B HHHHTS: ExpBur :bebeee-------------ebbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeeeebeebeeebeeebbeeeeebbbbeebeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :********************************************************************* ******************************: 8h12_A_1 317:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPCQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 416 SecStr : S GGG EEEEE SBB SSSTTT SEEEEESS GGGSSS B S EEEEEEEE GGGGGGSSSS SSHHHHT TT EEEEEEE SSS : ExpBur :eeebebbeebeeeebeebbbebeebeeebeeeeeebeebeeeebeebbbbbbebbbbbbbbebbebbbeeeeeebbbebbbbbeebebbbbbbebeeebb: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h12_A_1 417:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 516 SecStr : SS B EE SS TT B TTSS TTSSS B S EE B SSS GGGS EEEEEEE SS BB SS BEEEES: ExpBur :eeeebeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbeeeeeeeebbbeeeeeeeeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h12_A_1 517:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 616 SecStr :S B BEEEE TT B TTS EEE TTT EEEEE SS SEEEEEES TTT S EEEEET TTSHHHHHTGGGS TTTGGGSSSS EEE: ExpBur :beeeebbbeeeeeebeeebbbbeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbeeeeeebbbbbeeeebeebeeebbbeebeeebeebbeeeeebe: Contact : b queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ***********************************************************: 8h12_A_1 617:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 716 SecStr :ETTEEEES EE SS B SEEEETTEEEEEE --------- EEEEEEB TT EEEEEEEEEEEEEEEEE EEEE HHHHHSTT HH: ExpBur :beebbbbebeebeeeeeeebebeeebbbbbee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :****************************************************************************** : 8h12_A_1 717:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXX: 816 SecStr :HHHHHTTSTTSSHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTSS SSSS SS HHHHHHTT ----------------------: ExpBur :bbebbeeeeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeebbebbebbbebe----------------------: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h12_A_1 817:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 916 SecStr : HHHHHTTTEEEE SS HHHHTTTHHHHHHHHTTT STTSSSS HHHHHHHHHHTTT THHHHHTHHHHHHHHHHHHHHHHHHHHH SSSHHH: ExpBur :eeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbeebbeebbeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************** *************************************************************: 8h12_A_1 917:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1016 SecStr :HHHHHHHHHHHHHHHHTTS TTSS S HHHHHHSS TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS TTSSSSSEE: ExpBur :eebeeebeeebeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbbbbeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h12_A_1 1017:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1109 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEE BS EESSSEEEEESSSEEEE SSSEEEE TTS B BSTTEEEEEETTSSTT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeeeeeeeebeeeebeeee: |