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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [904 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS:WAC_BPT4 | |
2 | b | N 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 831L 832I 833C (identity: 100.0 %/83.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7zh5_A_1 identity=83.1% |
queryA 32:QHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFE: 131 :*************************************** ************** ***************** ***********: 7zh5_A_1 19:QHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXXPVIPFKDGIYFAATXXXXXXXXWVFGSTMNNKSQSVIIIXXXTNVVIRACNFE: 118 SecStr : EEESS EE SS SSEEEEEEEE TTEEEB -------- EE SS EEEEE -------- EEESSSSTTS EEB --- EEEES : ExpBur :eeebbebbbbeeeeeeeeeebeebeeebbbbebebebee--------eebebeebbbbbee--------bbbbeeeeeebebbebe---eebebebbbee: queryA 132:LCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNF: 231 :* ************ ********************* ***********************: 7zh5_A_1 119:LXXXXXXXXXXXXXXXXXXXXXDNAFNCTFEYISXXXXXXXXXXXXXXXXLREFVFKNKDGFLYVYKGYQPXXXXXXLPSGFNTLKPIFKLPLGINITNF: 218 SecStr : --------------------- S EEEE ---------------- EEEEEEEETTEEEEEEEE ------ SS EEEEEEEEE EE: ExpBur :e---------------------ebeeeeeeeeee----------------bebbbbbeeeeebebbebeee------eeeeeebbeeeeebebeeebeeb: queryA 232:RAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNA: 331 :**** *********************************************************************************: 7zh5_A_1 219:RAILXXXXXXXXXXXXXXXAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNA: 318 SecStr :E --------------- B EEEEEEEE TT EEEETTS HHHHHHHHHT SS SEEEEEEEEEB EEE TTTTTT : ExpBur :ebee---------------ebbbbebeebebbbebeeebebeebbbbebebbbbbebeeeeeebeeeeeebeebebeeeeebbbbeeeeeebeeeeebee: queryA 332:TKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT: 431 : *********** *********************************** **************** : 7zh5_A_1 319:XXXXXXXXXXRKKISNCVADYXXXXXXXXXXXXXCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGXXXXXXXXXXXLPDDFMGCVLAWNTRNXXXX: 418 SecStr :---------- EEE SB ------------- SS GGGGGG BSSEEEE GGGGGG S ----------- SS EEE ----: ExpBur :----------eeebeebebee-------------eeeeeeeebeeebbbebebbeeeeeeeeeeeeeee-----------eeeeeebbeeeeeeee----: queryA 432:STGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNG: 531 : *************** ******** *************************************: 7zh5_A_1 419:XXXXXXXKYRYLRHGKLRPFERXXXXXXXXXXXXXXXXXXXXXXXXLNDYGFYTXXXXXXXXXRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNG: 518 SecStr :------- B S SS SS ------------------------ B --------- EEEE BSSSS B SS EEEE SS: ExpBur :-------eeeeeeeeeeeeeee------------------------eeeeeeee---------ebbbbbbeeeeeebebbbeeeeeeeeeeebbebbbbe: queryA 532:LTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQT: 631 :****************************************************************************************************: 7zh5_A_1 519:LTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQT: 618 SecStr : EEEEEEEE TT B TTS EEETTTEEEEEETTS EEEEEEEE SSS S EEEESS SSHHHHHHHHT BSS SS EEEET: ExpBur :beeebebeeeeeebeeeeeebeeeeeeeebbebeeeebbebeeeebebbbbbbbbbbeeeeebbbbbeebebeebeebeeeeebebebeeeeeeeeeebe: queryA 632:QAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTEC: 731 :******************************* ***********************************************************: 7zh5_A_1 619:QAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXXSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTEC: 718 SecStr :TTEEEES EEEEEEE SEEETTTEEEES ---------- EEEEE SS EEEEEEEEEEEEEEEEE EEE HHHHSS S SHH: ExpBur :ebbbbbebeeeeeeeeeebebeeebbbbeee----------ebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebeeb: queryA 732:ANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDL: 831 :******************************************************************************** *: 7zh5_A_1 719:ANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXXXXXXXXXXXXXXXL: 818 SecStr :HHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTSS TTSSS S HHHHHTTTTS ------------------- : ExpBur :beebeeeeeebeebeeebeebbebbbebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeebbebbebbeeebeee-------------------e: Contact : b queryA 832:ICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQ: 931 :****************************************************************************************************: 7zh5_A_1 819:ICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQ: 918 SecStr : TT EEE SS HHHHHHHHHHHHHHHHTTTT SSSS SSHHHHHHHHHTT SHHHHHSHHHHHHHHHHHHHHHHHHHHT S SSHHHH: ExpBur :eeeeeebebeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeebe: Contact :bb queryA 932:DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL:1031 :****************************************************************************************************: 7zh5_A_1 919:DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL:1018 SecStr :HHHHHHHHHHHHHHHGGG SSSS SSTTTSSSS SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS STTTSSSS : ExpBur :ebeeebeebeeebeeeeeeeeebebeebeebbeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbbbbeeeebbbeeebb: queryA 1032:MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTV:1119 :****************************************************************************************: 7zh5_A_1 1019:MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTV:1106 SecStr :EEEEEEETTEEEEEEEEEEEEEEEEE S EESSS EEEESSSEEE SSS EEE SSS B TTTEE S SSSS TT : ExpBur :bbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbeeeeeebbbbeebbeeeebeeeebeeeeeeeebeeeeebbe: |