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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1052 aa] | Spike glycoprotein :SPIKE_CVHSA | |
2 | b | N 1 (N) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 699N 904Q (identity: 100.0 %/94.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6nb6_A_1 identity=94.5% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :**** ********************************************** ****************************************: 6nb6_A_1 37:RCTTXXXXXXXXXTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136 SecStr : --------- EEE TT EE SS SEEEEEEEEE TT EEEEEEEETTEE EE TTEEEEEEEESS EEEEESS STTS EEEEE: ExpBur :eeee---------eeeebbebbbbeeeeeeeeeeeeebebebbebeeebeeeeeeeeeebeeeeebeebbbbbbbbeeebebbeeebeeeeeeeebeeee: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :********************** ********************** ****************************************: 6nb6_A_1 137:NNSTNVVIRACNFELCDNPFFAXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236 SecStr :E SS EEEEEE EEEEEEEE -------- EEEEEE S EEEE -------- EEEEEEEEEEEETTEEEEEEEEEEEEESSS EEE: ExpBur :eeeebeebbbbbbbebeeebbe--------eeebeeeeeeeeeeeeeeeeee--------ebeeeebbbebeeeeeeeebebeeebebeeebeeeeeebe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************* ********************************************************************: 6nb6_A_1 237:PIFKLPLGINITNFRAILTAFXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336 SecStr :EEEEE SEEEEE B ----------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEEE : ExpBur :eeeebebebeeebbbbbbeee-----------eebbbbeebebebbbbbeeebebeebbbbebebbbbbebeeeeeebeebeeeeeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 6nb6_A_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436 SecStr :S THHHHS S BSTT EEEEE SEE SSTTTSS SEEEE SS TGGGGG BSEEEEEEEEEEGGGGGGSSTT SHHHHHT SS : ExpBur :eeeeebebeebbeeeebebbeebeeeebeebebebeeeeeeeebeeeeeeebebeebbeebbbbbebbbbbbbbebbeebeeebeeebbeebbbbeeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 6nb6_A_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 536 SecStr :SEEEEEE TTTT BTT B EEE SS TT B TTS TTSTT B SEEE BBTTS GGGSEEEEEEEEEE SSS SEE S : ExpBur :bbbbbbebbeebbeeebbeebeebebeeeebeeebeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbebeebeeebebbbeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 6nb6_A_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636 SecStr : SSEEEEEETTEEEEEEEEE TT SEEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEESS HHHHHHHHHTT EES: ExpBur :eeeeeebbebebbebeeebbbeeeeeebeeeebeeeeeeeeeebbebeeeeebbbbeebeebebbbbbbbeeebeebbbbbbebebeebeebbeeeebee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** ***********************************************: 6nb6_A_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736 SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEES EEEEEEEEEEE EEE: ExpBur :ebeeeeeeeeeeebeebbbbebbeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbebbe: Contact : b queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************* : 6nb6_A_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836 SecStr :E HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEEGGGTS TTSS S HHHHHHHTT ---------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbebbeeeeeeeeebebebbebeebbbeeeeeeebbebbebbbeee---------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :******* ***************************************************************************************: 6nb6_A_1 837:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936 SecStr : BEEE ------ EEE TT EEEE SS HHHHHHHHHHHHHHHHHHGGGTTTSS HHHHHHHHHHTTTS THHHHHTHHHHHHHHHHHHHHHH: ExpBur :ebbeeee------eeeeebebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbebbeebbeebe: Contact : b queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6nb6_A_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036 SecStr :HHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6nb6_A_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136 SecStr : STTSS SSEEEEEEEEEETTEEEEEEEEEEE EEEEEE S EEETTEEEEESSSEEEEETTEEEEE TTS B BGGGEEEEEESSS TT EE : ExpBur :bbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeebeeeeeeeee: queryA 1118:TVYDPLQPEL:1127 :**********: 6nb6_A_1 1137:TVYDPLQPEL:1146 SecStr : B THHHH : ExpBur :ebeeeeeeee: |