CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1054 aa] | Spike glycoprotein | |
2 | b | L 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 106T 227N 229T (identity: 100.0 %/96.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5x58_A_1 identity=96.8% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :*********************************************************** ****************************************: 5x58_A_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S B EEE EEEEE SS S EEEEEEEE TT EEEEEEE SSB EE TT EEEEEEESS EEEESSSSSSS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbebeeeebeeeeeebebbbbbbebebbbbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb: Contact : b queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 5x58_A_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SSEEEEEEEEE S BEEE TTT EEEE S S EEEEEEEEEEEE S SS EEEEEEEEEETTEEEEEEEE SSS EEEEE: ExpBur :beeebbebbbbbbebbebbbbebeeeebeeeeeebeeeeeeeebeeebeeeebebeeeeeebeebbbbbbbeeeeebebbebeeebebeeebbeebbbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************** *************************************************************************: 5x58_A_1 205:PIFKLPLGINITNFRAILTAFSXXXXTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE EEEE B B ---- SEEEEEEE EEEEEEEE SSS EEEETTSSHHHHHHHHHT SS SEE B EEE : ExpBur :eeeebebebebeebbbbbbbbe----ebbbbebbbbbbebeebebbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbebeeebebbeb: Contact : b b queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 5x58_A_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :SS EE GGGTTTT S STT EEEEE SEE STTTSS SEEEESSS SSTTTTS BS EEEEEEEE HHHHHHSSBS TTSSSTTTS B SSS : ExpBur :eeeeeebbeebbeeeebebbbebeeeebeebbbebeebeeeeebeeeeebeeebeebeeebbbebebbbbbbbeebbebbbeeeeeeebbebbebbeeee: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 5x58_A_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 504 SecStr : EEEEEE TTTT SS S B SS TT B SSS TTSTT B SB TTS GGGS EEEEEEE S SS B : ExpBur :bbbbbbebeeebbeeebbeebebbeeeeeebeeeeeeeeeeebbeeeeebeeeeeebeebbeebebebeeeeeebbbbbbbbbbeeeeeebbbbbeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 5x58_A_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEE SS BEEEE TT EEESSSSSEEEEE TTT EEEEE B EEE TTT EEEE S SHHHHHHHTTT SS: ExpBur :eeeeebbbebbbbebeeebbbeebeeebeeeebbbeeeeeebebbbbbeeeeebebeebbeeebbbbbbbbeebeeebbbbbebebeebeebeeeebbeb: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 5x58_A_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS S TT EESS EE S SEEEETTEEEE --------- EEEE S SSEEEEES B EEEEEEE B : ExpBur :ebeebeeeeeebeeeebbbbebeebeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbb: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 5x58_A_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr : HHHHHHSS SHHHHHHGGG SSSSSHHHHHHHHHHHHHHHHHHHHTT SS S BTTB S SSS SSSS HHHHHHHHS --------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeebbeebbebbbebbeebbeebeeeeeebeebebebbebebbbeeeebeeebbebbebbbeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 : ****************************************************************************************: 5x58_A_1 805:XXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr :------------ TT B SS HHHHHHHHHHHHHHHHHT SHHHHSS HHHHHHHHHHHHT THHHHHSHHHHHHHHHHHHHHHH: ExpBur :------------eeeeeeeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :****************************************************************************************************: 5x58_A_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHHS SHHHHHHHHHHHHHHHHHHHHHTSS TTSS S HHHHHTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS: ExpBur :eebeeeeebeeebbebeeebeebbeebeeebeeeeebeeeebeebeeebeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbe: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1104 :***************************************************************************************: 5x58_A_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1091 SecStr : STTTS SSSEEE EEEETTEEEEEEEE B EEEEEE SSB SSS BEESS EEETTEEEB TTS B STTEE : ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebeebeeeeeebeeeeebbbbeeeeeebbbbebbebeeeeeeeebee: |