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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1087 aa] | Spike glycoprotein | |
2 | b | J 1 (G) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 109N 131E (identity: 100.0 %/97.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8tc5_A_1 identity=97.0% |
queryA 16:LDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVI: 115 :************************************************************* **************************************: 8tc5_A_1 1:LDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVI: 100 SecStr : S SS B EEEE S EE SS SEEEEEEEEE TT EEEEEEEETTEE EE TT EEEEEEESS EEEEESSSSTTS EEE: ExpBur :eeeeeebeeeeeeeeeebebbebbbbbbeeeebbeeeeebeeebbbbebebebbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebbbbb: Contact : b queryA 116:IINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNT: 215 :****************************************************************************************************: 8tc5_A_1 101:IINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNT: 200 SecStr :EEE SS EEEEEEEEEE SS EEEEETTT EEEE SEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS E: ExpBur :bbeebeeebbebbbbebbebbbbbbbeeeeebeeebbeeebeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebebbebeeebeeeeebbeebeb: Contact : b queryA 216:LKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR: 315 :*********** *********** **** **************** ******************************************************: 8tc5_A_1 201:LKPIFKLPLGIKITNFRAILTAFLPAQDTWGTSAAAYFVGYLKPTKFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR: 300 SecStr :EEEEEEEE EEEEEEEEEESBTTB EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S SEEEE EEEE: ExpBur :beeeeebebebebeebbbbbbbbeeeeeebebbebbbbbbebbebebbbebbeebebeebbbbeeebbbebbbeeeebebeebeeebeebbeeeeeebbb: queryA 316:FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD: 415 :**************************** *************** *******************************************************: 8tc5_A_1 301:FPNITNLCPFGEVFNATKFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD: 400 SecStr : SB HHHHHT S BGGG EEEEE SEE GGGGGGT SEEEEESS GGGGGG EESSEEEEEEEEEGGGGGGSSTT SHHHHHT TT: ExpBur :bbebeeebebeebbeeeebbbbeebeeeebeebebeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbeebbebbbeeeebebbbebbebbee: queryA 416:FMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKL: 515 :*************************************************************** ******* ****************************: 8tc5_A_1 401:FMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLKDYGFYTTSGIGYQPYRVVVLSFELLNAPATVCGPKL: 500 SecStr : EEEEEEE HHHH BSS B EEE SS TT B TT S TTSTT B SEEE BBTT GGGSEEEEEEEE SSS EE S : ExpBur :bebbbbbbebeeebbeeebbeebebbeeeeeebbeeeebeeeeebbeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbebbebeeeebebbbeee: queryA 516:STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQL: 615 :****************************************************************************************** : 8tc5_A_1 501:STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDXXXXXXXXXX: 600 SecStr : SSEEEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE S EEEEES TTT S EEEETT ----------: ExpBur :eeeeeeeebbebbbbbeeeebebeebeeebeeeebbbeeeeeebbbbbbeeeeebbebeebeebbbbbbbbbeeeeeeebbbbeebebee----------: queryA 616:TPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAK: 715 : ********************************************** ****************************** **************: 8tc5_A_1 601:XXAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFLISITTEVMPVSMAK: 700 SecStr :-- S SSEEEETTEEEES EE S B SEEEETTEEEEEEE ------- EEEEEEEB SSEEEE EEEEEEEEEEEE E: ExpBur :--eeebeeeeeeebebebbbbbebbeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeebebbeebebbbeeebbbbbbbb: queryA 716:TSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGF: 815 :*************************** ********** *********************** *************************************: 8tc5_A_1 701:TSVDCNMYICGDSTECANLLLQYGSFCAQLNRALSGIAVEQDRNTREVFAQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGF: 800 SecStr :EEE HHHHHHTT HHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHHH SS S TTT GGGS SSSS SS HHHHHHHHTS S SS: ExpBur :bebebeebbbeebeebbebbeeeeeebeebeebbeebbebbbbbbeebbeebeeeeeeeeebeeeebebeebbbeeebeeeebebbbbbbeebeeeeeee: queryA 816:MKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQ: 915 :****************************************************************************** *********************: 8tc5_A_1 801:MKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVAQNVLYENQKQIANQFNKAISQ: 900 SecStr : HHHHHHTGGG HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHT SSSSS HHHHHHHHHHHTT HHHHHHTHHHHHHHHHHHHHH: ExpBur :eeeeeebeeeeeeeeeebebeeebbeeeeeebeeeebbeebbbbbbbbbebbbeeeeeeeeeeebbebbbebbeeeebeeebbeeeeeebbebbeebbee: queryA 916:IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV:1015 :****************************************************************************************************: 8tc5_A_1 901:IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV:1000 SecStr :HHHHHHS TTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT: ExpBur :bbeebeeeeeebeebbebbeebeebbeebbeebeeeeebebbebeebeeeeeeebbeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebb: queryA 1016:LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGII:1115 :****************************************************************************************************: 8tc5_A_1 1001:LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGII:1100 SecStr :SS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEE EEEE S EEETTEEEEESSSEEEE SSSEEEE SSS EE GGGEEE S TTTSTT E: ExpBur :bbebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeebbbbeeeeebbeeeeebbbbeeebbeeeebeeeebeeeeebeeeeebe: queryA 1116:NNTVYD:1121 :******: 8tc5_A_1 1101:NNTVYD:1106 SecStr :E : ExpBur :eeebbe: |