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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1091 aa] | Spike glycoprotein :U5WI05_SARS | |
2 | b | J 1 (J) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 778Y(D) 783N 785S 786Q (identity: 75.0 %/91.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8tc0_A_1 identity=91.0% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 : * *** * ** ** ******* **** * * ** **** **** * * * ** ***************** ****************** : 8tc0_A_1 1:KCLDFDDRTPPANTQFLSSHRGVYYPDDIFRSNVLHLVQDHFLPFDSNVTRFITFGLNFDNPIIPFKDGIYFAATEKSNVIRGWVFGSTMNNKSQSVIIM: 100 SecStr : S EEE TT B SS SEEEEEEEEE TT EEEEEEEETTEE EE TT EEEEEEESS EEEEESSSSTTS EEEEE: ExpBur :eeeebeeeeeeeeeeeebbebbbbbbeeeebbeeeeeeebbbbebebebeebebeeeebbbeebebeebbbbbbbbebbbbbbbbbbbebeeebbbbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :***** *************** * * ** ** ********* * * ** ** **** ****** ****** ** ***** ** *** **: 8tc0_A_1 101:NNSTNLVIRACNFELCDNPFFVVLKSNNTQIPSYIFNNAFNCTFEYVSKDFNLDLGEKPGNFKDLREFVFRNKDGFLHVYSGYQPISAASGLPTGFNALK: 200 SecStr :E SS EEEEEE EEE SS EEEEETTTTEEE SEEEE EEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS BE: ExpBur :eebebebbebbbbebbebbbbbbeeeeeebeeeebbeebeeeeeeeebeeeeeebbeeeeebebbebbbbbeeeeebbbbbeeeebebeebbbeebebbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*************** **** * * *************************************************************** ** *****: 8tc0_A_1 201:PIFKLPLGINITNFRTLLTAFPPRPDYWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVAPSKEVVRFP: 300 SecStr :EEEEE EEEEEEEE SSTT EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S SEEEE EEEEE : ExpBur :eebebebebebeebbbbbbbbbebeeeebbbbbbbbbbbbeebebbbebeeebebeebbbbeeebbbbbbbeeeebebeebeeebeebeeeeeeebbbbb: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :*************** ********** *************** ******************************************************** : 8tc0_A_1 301:NITNLCPFGEVFNATTFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFT: 400 SecStr : SB HHHHHT S BSTT EEEEE SEE GGGGGGT SEEEEESS GGGGGG EEEEEEEEEEEEEHHHHTTSSTT SHHHHHT TT : ExpBur :ebeeebebeebbeeeebbbbbbbeeeebeebebebeebeeebeeeeeebbebeeeebebbbbbebebbbbbbebebbebbbeeeebebbbebbebeeebe: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************** ********* ***************************** ************ * ******************************: 8tc0_A_1 401:GCVLAWNTRNIDATQTGNYNYKYRSLRHGKLRPFERDISNVPFSPDGKPCTPPAFNCYWPLNDYGFYITNGIGYQPYRVVVLSFELLNAPATVCGPKLST: 500 SecStr :EEEEEEE HHHH BSS B EEE SS TT B TT S TTSTT B SEEE BBTT GGGSEEEEEEEEEE SSS SEE S : ExpBur :bbbbbbebeeebbeeebbeebebbbeeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbbebeebebebbbeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :************************************************************************ *************** : 8tc0_A_1 501:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDXXXXXXXXXXXX: 600 SecStr : SS EEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE S EEEEES TTT S EEEETT ------------: ExpBur :eeeeeebbebbbbbeeeebebeebeeebeeeebbbeeeeeebbbbbbbeeeebbbbeebeebbbbbbbbbeeeeeeebbbbeebebee------------: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 : ** ****************************************** ***********************************************: 8tc0_A_1 601:SWRVHSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 700 SecStr : S S S EEETTEEEES EE SS B SEEEETTEEEEEEE ------ EEEEEEEB SSEEEEEEEEEEEEEEEEEE EEE: ExpBur :eeebeeeeeeeeebebbbbbbbbeeeeeeeeebebeeebbbbbeeee------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbb: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :************************************ *********************** ***************************************: 8tc0_A_1 701:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAVEQDRNTREVFAQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 800 SecStr :E HHHHHHTT HHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE GGGS SSSSS S HHHHHHHHHS SSSSS : ExpBur :bebeebbbeebeebbebbeeeeebbeebeebbeebbebbbebbeebbeebeeebeebeebebeebebebbbbeeeeeeeebebbbbbbebbeeeeeeeee: Contact : b b bb queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****************************************************************************************************: 8tc0_A_1 801:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 900 SecStr : HHHHHHT SS HHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHT SGGGTSS HHHHHHHHHHHTT HHHHHHTHHHHHHHHHHHHHHHH: ExpBur :eeeebeeeeeeeeebbebeeebbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :****************************************************************************************************: 8tc0_A_1 901:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1000 SecStr :HHHHSS TTHHHHHHHHHHHHHHHHHHHGGG SSSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeeeeeebeebbbbbeebeebbbebbeebeeeeebebbebeebeeeeeeeebbebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :***************************************************************************************** **********: 8tc0_A_1 1001:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGSCDVVIGIINN:1100 SecStr : STTTSSSSEEEE EEEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SSSEEEE TTS B BTTTEEEEEETTT SS EE : ExpBur :ebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbbeeebbebeebbbbeeeeebbbbbeebbeeeebbeeebeeeeebeebeeeeee: queryA 1118:TVYDPLQPE:1126 :*********: 8tc0_A_1 1101:TVYDPLQPE:1109 SecStr : B TTTT : ExpBur :ebeeeeeee: |