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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1095 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | J 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 693T 1056N 1057F 1058T (identity: 100.0 %/99.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7sg4_A_1 identity=99.8% |
queryA 35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134 :****************************************************************************************************: 7sg4_A_1 35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134 SecStr : S EE SS SS EEEEEEEE TT EEEEEETTB EE TT EEEEEEESS SS EEEEESSSSSSS EEEEEE SSSEEEE S: ExpBur :ebebbbbbbeeeeeeeeeeebebbbbbbeeebeeeebeeeeeebeebebeebbbbbbbbebbbbebbbbbbebeeeeebbbbbbbebbbbbbbbbbebee: queryA 135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234 :****************************************************************************************************: 7sg4_A_1 135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234 SecStr :S B STTBTTTB B S EEE SSTTHHHHTSSSTTSEEEEEEEEEETTEEEEEEEEEE SSTT EEEEEEEE EEEEE: ExpBur :ebeebebeeeeeeeeebbbeebeeeeeeeebeeebeebeeeeebbebbbbbbbbeeeeebebbbbbeebeeeeebeeeebbbeeebebebebebeebbbb: queryA 235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334 :****************************************************************************************************: 7sg4_A_1 235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334 SecStr : TT SS SSSSSEEEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHTT S SEEEEEEEEE EEEE S B HHHHH SS : ExpBur :bbeeebeeeeeebebbbbbbbebeebebbbebeeeeebeebbbbebebbbbbebeeeebebeebeeebeebeeeeeeebebbeeeeeebebeebbeeeeb: queryA 335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434 :****************************************************************************************************: 7sg4_A_1 335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434 SecStr : TTT EEEEE SEE THHHHHH S SEEEESSS HHHHTT EESEEEEEEEEE GGGGGG STT STTGGGTT TTSEEEEEEEE TTTT BTT : ExpBur :bbbeebeeeebeebebebeebeeeeebeeeeeeeeebeebbeeebbebbbbbbbbebebeeebbbeeeeebbbbbbbbbeebebbbbbebbeeebbeeeb: queryA 435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534 :****************************************************************************************************: 7sg4_A_1 435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534 SecStr :EEEEE TT STTTTT SS SSSS SSSTT EEEB TTS TTT EEEEEEEEE SS EE TTSEEEEESSS EE: ExpBur :beebbbbbebeeeeeebebbbeeebebbeeeebeeeeeebeeeeeebbbeeebeeeebbebbbbbbbeeeeeeeebbbeeeeeeeeeeebbebebeeeee: queryA 535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634 :****************************************************************************************************: 7sg4_A_1 535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634 SecStr :EEEEEE TT EEE TTS EEEEE TTT EEEEE EEEEEEEE TTT EEEEES GGGS SS TTTTTT EEEETTE: ExpBur :ebbbbeeeeebeeeeeebeeeeeeebbbbbeeeeebbebeebeebbbbbbbbbbeebebbbbbbeebebeebbebeeeeeebbbeebeebbbeeeebeeb: queryA 635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734 :****************************************************************************************************: 7sg4_A_1 635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734 SecStr :EEES EE SS SEEEETTEEEEEEE GGGGGGGEEEEEEE S SSEEEEEEEEEEEEEEEEEE EEE HHHHHHTT HHHHHH: ExpBur :bbbbbbebeeeeeeebebeeebbbbeeeeeeeeeeeeebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebeebeeb: Contact : b queryA 735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834 :****************************************************************************************************: 7sg4_A_1 735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834 SecStr :HGGG THHHHHHHHHHHHHHHHHHHHHHHHTT SS S EETTEE TTTSB TTSSSSSBHHHHHHHHS B SSSB TTS S SS STT SS: ExpBur :beeeeeebeebeeebeebbebbbebbeebbeebeeebeeeeebebebbebeebbbeeeeeeeebebbebbbeebbbeebbbbeeeeeeeeeeeeeeeebe: queryA 835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934 :****************************************************************************************************: 7sg4_A_1 835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934 SecStr : TTSSEEE SS HHHHHHHHHHHHHHHHHHGGGGGTSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHH: ExpBur :beeebbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebbeebeeebeebeebbebb: queryA 935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034 :********************************* *****************************************************************: 7sg4_A_1 935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034 SecStr :HHHHHHHHHHHHHHH TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTTSSSSEEEEEE: ExpBur :eebbebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbeebeeeebbbeeebbbbb: queryA 1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129 :***********************************************************************************************: 7sg4_A_1 1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129 SecStr :EEEETTEEEEEEEEEEEEEEEEEEE S EE SSSEEEESSSEEEE SSSEEEE TTS B BTTTEEEES TTSSTT EE B TTHHHHT : ExpBur :bbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeebbbeeeeebebbbebbbbeeebbeeebeeeeeeeeeeebeeeebeeeeeeeeee: Contact : bbb |