Protein Model on 8tc1_A_1_HA_1 (TEMPLATE: 8tc1 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) A 1 (A) polymer(polypeptide(L)) [1088 aa] Spike glycoprotein :Q3ZTF3_SARS
2 b HA 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 1054E 1056N (identity: 100.0 %/96.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8tc1_A_1 identity=96.9%
queryA        16:LDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVI: 115
                :************************************************************* **************************************:
8tc1_A_1       1:LDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVI: 100
SecStr          :  S    SS B    EEEE  S   B  SS    SEEEEEEEEE  TT EEEEEEEETTEE    EE TT EEEEEEESS    EEEEESSSSTTS EEE:    
ExpBur          :eebeeebeeeeeeeeeebebbebbbbbbeeeebbeeeeebeeebbbbebebbbbebeeeebbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebbbbb:    

queryA       116:IINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNT: 215
                :*********************** ****************************************************************************:
8tc1_A_1     101:IINNSTNVVIRACNFELCDNPFFVVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNT: 200
SecStr          :EEE SS EEEEEEEEEE SS EEEEETTTTEEEEE SEEEEEEEEEEEE        S   SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS       :    
ExpBur          :bbeebebebbebbbbebbebbbbbbbeeeeebeeebbeeebeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebebbebeeebeeeeebbeebeb:    

queryA       216:LKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR: 315
                :*********** ***************  ***********************************************************************:
8tc1_A_1     201:LKPIFKLPLGIKITNFRAILTAFSPAQGTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR: 300
SecStr          :BEEEEEEE      EEEEEEEEEESSTT  B   EEEEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHT S   SEEEE          EEEE:    
ExpBur          :beeebebebebebeebbbbbbbbbeeeeeebbbbbbbbbbebeebebbbebbeeeebeebbbbeeebbbebbbeeeebebeebeeebeebeeeeeeebbb:    

queryA       316:FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD: 415
                :**************************** *************** *******************************************************:
8tc1_A_1     301:FPNITNLCPFGEVFNATKFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD: 400
SecStr          :     SB  HHHHHT S   BGGG EEEEE SEE  GGGGGGT   SEEEEESS GGGGGG EEEEEEEEEEEEEGGGGGGSSTT  SHHHHHT    TT:    
ExpBur          :bbebeeebebeebbeeeebbbbeebeeeebeebebeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbeebbebbbeeeebebbbebbebbee:    

queryA       416:FMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKL: 515
                :********************************************** ********* ******  ****** ****************************:
8tc1_A_1     401:FMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSSDGKPCTPPAPNCYWPLRGYGFYTTSGIGYQPYRVVVLSFELLNAPATVCGPKL: 500
SecStr          :  EEEEEEE HHHH BSS B   EEE   SS   TT        B TT S   SSSTT B SEEE  BBTT  GGGSEEEEEEEEEEESSS   EE S  :    
ExpBur          :bebbbbbbebeeebbeeebbeebebbeeeeeebeeeeebeeeebbbeeeeeeeeeeeebeebbebbebeeeeeebebbbbbbbebbebeeeebebbbeee:    

queryA       516:STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQL: 615
                :*********************************************************************************************       :
8tc1_A_1     501:STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTLXXXXXX: 600
SecStr          :      SSEEEEEETTEEEEEEEEE      TT  EEE TT  EEEEE TTT  EEEEE S   EEEEEES TTT S  EEEEET   SS    ------:    
ExpBur          :eeeeeeeebbebbbbbeeeebebeeeeeebeeeebbbeeeeeebbbbbbbeeeebbebeebeebbbbbbbbbeeeeeeebbbbeebebeeeeee------:    

queryA       616:TPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAK: 715
                :  **********************************************       *********************************************:
8tc1_A_1     601:XXAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAK: 700
SecStr          :--    S   SS EEETTEEEES EE S     SEEEETTEEEEEEE ------- EEEEEEE            SSEEEEEEEEEEEEEEEEEE    E:    
ExpBur          :--eeebeeeeeebbebebbbbbebbeeeeeeeeebebeeebbbbbeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbb:    

queryA       716:TSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGF: 815
                :*************************** ********************* ************ *************************************:
8tc1_A_1     701:TSVDCNMYICGDSTECANLLLQYGSFCRQLNRALSGIAAEQDRNTREVFVQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGF: 800
SecStr          :EEE HHHHHHTT HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH   SS     S   TTT   GGGS  SSSS SS HHHHHHHHTS  S SS :    
ExpBur          :bebebeebbbeebeebbeebeebeeebeebeebbeebbeebbbbbeebbeebeeeeeebeebebeebebeebbbeeebeeeebebbbbbbeebeeeeeee:    

queryA       816:MKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQ: 915
                :****************************************************************************************************:
8tc1_A_1     801:MKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQ: 900
SecStr          :   HHHHTT GGG  HHHHHHHTTEEEE  SS HHHHHHHHHHHHHHHHHHTTSTTSSS     HHHHHHHHHHTTT  HHHHHHTHHHHHHHHHHHHHH:    
ExpBur          :eeeeeebeeeeeeeeeebebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbee:    

queryA       916:IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV:1015
                :****************************************************************************************************:
8tc1_A_1     901:IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV:1000
SecStr          :HHHHHHS   TTHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT:    
ExpBur          :beeebeeeeeebeebbebbeebeebbeebeeebeeeeebebbebeebeeeeeeebbeebbeebbebbbebbeebbeebeeebeebeeebeebbebbeebb:    

queryA      1016:LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGII:1115
                :****************************************************************   *********************************:
8tc1_A_1    1001:LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFSXXSWFITQRNFFSPQIITTDNTFVSGNCDVVIGII:1100
SecStr          :SS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEE  S EEETTEEEE SSSEEEE -- EEEE TTS   EE  TTS EEEEESSSSTT E:    
ExpBur          :beebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeebbbeeeebbbbee--ebbbbbebbbeeeebeeebbeeeeeeeebeebe:    
Contact         :                                      b b                                                           

queryA      1116:NNTVY:1120
                :*****:
8tc1_A_1    1101:NNTVY:1105
SecStr          :E    :    
ExpBur          :eeebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123