Protein Model on 8ajl_A_1_C_1
(TEMPLATE: 
8ajl
)Protein Model on 8ajl_A_1_C_1
(TEMPLATE: 8ajl
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1109 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | |
| 2 | b | C 1 (B) | polymer(polypeptide(L)) [1109 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | 54L 56Q 291K 301Q 342R 368G 369V 370S 372T 373K 377L 383Y 390K 392D 395R 400G 402T 403G 404V 407D 408Y 442Y(S) 450P 451F 452E 453R 455I 456S 479N 489I 502E 503L 504L 505N 531G 533T 534G 535T 542S 543K 544R 546Q 549Q 552G 553R 554D 555V 556S 557D 558F 560D 574S 575P 576C 577S 578F 599Q 600D 602N 608T 609A 633A 651P 653G 654A 655G 656I 679M 681L 682G 683A 685S(N) 687I 688A 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 947Q 950S 951N 952F 953G 969V 984Q 988T 991T 992Q 995I 999E 1021R 1022V 1023D 1027K 1028G 1029Y 1054E 1059T 1060A 1061P 1071F 1072P 1089R 1103F 1105S 1110V 1111V 1112I (identity: 98.2 %/87.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8ajl_A_1 identity=87.6% |
queryA 19:CTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH------TFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQ: 112
:* * ** ** ** ******* ***** * **** **** **** * * ** *** ** ********** *** **** * **:
8ajl_A_1 2:CGTLSNKSPPNMTQFSSSRRGVYYPDDIFRSDVLHLTQDYFLPFNSNVTRYLSLNSDSDRIVRFDNPIIPFGDGVYFAATEKSNVIRGWIFGSTLDNTSQ: 101
SecStr : SB EEEESS EE SS S EEEEEEEE TTEEEEEEEEE SS TTSBEE EE S EEEEEEESS EEEEEEESS STTSE:
ExpBur :bbeeeeebeeeeeebebbebbbbbbeeeebbeeeeebeeebbbbebebbbbbbeeeeeeeebbbbbeebebeebbbbbbbbebbbbbbbbbbbebeeeee:
Contact : b b
queryA 113:SVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSG: 212
:* ** **** *** *** *** * **** * * * * ** *** ** * * ****** ************* **** ** ** **** * ****:
8ajl_A_1 102:SAIIMNNSTHIVIRVCNFQLCDDPMFAVSRPTGQHYKTWIYTNARNCTYEYVSKSFQLDVSEKPGNFKHLREFVFKNVDGFLHVYSGYEPIDVARGLPSG: 201
SecStr :EEEEEE SSSEEEEEEEEEEEEEEEEEEESSS S SEEEEEEEE EEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS :
ExpBur :bbbbbbbbeeebbebbebebbebbbbbbbeeeebeeeebbeeeeeeeeeeeebeeeeeebebeeeebeebbbbbbbeeeeebbbbbbeeebeeeebbbee:
queryA 213:FNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGD: 312
:* ***************** * * *** ** ***************** ************** ** **** **** *********** * :
8ajl_A_1 202:FSVLKPIFKLPLGINITNFRVIMTMFSPTTSNWGAEAAAYFVGYLKPTTFMLKFDENGTITDAVDCSQDPLSELKCTVKSFNVEKGIYQTSNFRVSPTKE: 301
SecStr : EEEEEEEE S EEEEEEEEEESSSSS B SEEEEEEE EEEEEEEEE TT EEEEEETTS HHHHHHHHTTSS SEEEE S SE:
ExpBur :ebebeeebebebebebeebbbbbbbbbeeeeebbbbebbbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbbeeeee:
Contact : b b
queryA 313:VVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 412
:******************** ********* ** ************ ********** ********* *******************************:
8ajl_A_1 302:VVRFPNITNLCPFGEVFNATTFPSVYAWERTRISDCVADYSVLYNSTSFSTFKCYGVSPTKLNDLCFSSVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 401
SecStr :EEE B THHHHHT SS BGGG EEEEE SEE GGGGTTT SEEEEESS TTGGGG EESEEEEEEEEEETTGGGGSSTT SHHHHHT :
ExpBur :bbbbeeeeeebebeebbeeeebbbbebbeeeebeebbbbbeebeeeeebeeeebeebeeeebebbbbbbbebbbbbbbeebbebbbeeeebebbbebbeb:
Contact : b bbb bb b b b b b b bbb bb
queryA 413:PDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCG: 512
:**** *** **** * ********** ** ****** ************* ******** *** *** *** * *************************:
8ajl_A_1 402:PDDFTGCVIAWNTANLDATSTGNYNYYYRSLRHGKLKPFERDISNVPFSPEGKPCTPPAFNCYRPLNTYGFNPTVGIGYQPYRVVVLSFELLNAPATVCG: 501
SecStr : TT EEEEEEE HHHHTSSGGG EEE SS TT B SSSS SS TT B SEEE TTS TTTSEEEEEEEEEE SS EE :
ExpBur :beebebbbbbbebbeebbeeeeeeebebbbeeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebebeeeeeeeeebbbbbbbbbeeeeeebbbbb:
Contact : b bbbb bb b b bbbb
queryA 513:PKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA: 612
:***** * ******************* *************************** ********************* **************** *****:
8ajl_A_1 502:PKLSTELVKNQCVNFNFNGLTGTGVLTDSSKRFQPFQQFGRDVSDFTDSVRDPKTLEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPTAIHA: 601
SecStr : TTSEEEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE TT S EEEEE TTT EEEETT TTTHHHHTTT:
ExpBur :eeeeeeeeeeebbebbbbbeeeebbbeeeeeebeeeebbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb:
Contact : b bbb bbb b b bbbbbbb b bbbbb bb b bb
queryA 613:DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712
:******** **** **************** ****************** ************* ****************** ********:
8ajl_A_1 602:DQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGAENSIAYSNNTIAIPTNFSISVTTEVMPVS: 701
SecStr :TTS HHHHGGGSSSSEEE SSSEEESSEE SS B SEEEETTEEEEEE -------- EEEEEEB S TTEEEEEEEEEEEEEEEEEE :
ExpBur :eebeeebeebbeeeeebebeebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebebebbbbb:
Contact : b b bbbb b bbb b bbbbb bbb b
queryA 713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812
:******** ********** ********************* *** **************** * ************* ********************:
8ajl_A_1 702:MAKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALSGIAVEQDKNTREVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLAD: 801
SecStr : EEEE HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHTT S EETTEEGGGTSB TTSSS SBHHHHHHHHHS SS:
ExpBur :bbbbebebeebbbeebeebbebbeeeeeebeebeebbeebbebbbebbeebbeebeeeeeebeebebeebebeebbbeeeeeeebbebbbbbbeebeeee:
queryA 813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912
:************** ********************** **************************************************************:
8ajl_A_1 802:AGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 901
SecStr :SSS GGGGS GGG HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHTTTHHHHSS HHHHHHHHHHHHT THHHHTTHHHHHHHHHHH:
ExpBur :eeeebeeeebeeeeeeeeeebebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeeb:
queryA 913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012
:****************************************************************************************************:
8ajl_A_1 902:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1001
SecStr :HHHHHHHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:
ExpBur :beebeeebeebeeebeebbebbeebbebbeebbeebeeeeebebbebebbeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbe:
Contact : b b b bbbb b b b bb b b
queryA 1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112
:****************************************************************** ************ ********************:
8ajl_A_1 1002:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVSGNCDVVI:1101
SecStr :HHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS EE BTTTEEEEEETTSST:
ExpBur :ebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbbbeebbbbbeeeebbbbbeebbbeeebbeeebeeeeebeeee:
Contact : bbb bbb b bbb bb b b b bbb
queryA 1113:GIINNTVYDPLQPELD:1128
:****************:
8ajl_A_1 1102:GIINNTVYDPLQPELD:1117
SecStr :T EE B TTGGG :
ExpBur :eeeeeebeeeeeeeee:
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[assembly_id:1]
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