Protein Model on 6acj_A_1_C_1
(TEMPLATE: 
6acj
)Protein Model on 6acj_A_1_C_1
(TEMPLATE: 6acj
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | 304N 306R 342R 368G 369V 370S 372T 373K 377L 444R 449R 451F 452E 453R 455I 456S 505N 506A 533T 543K 544R 548F 549Q 551F 552G 553R 555V 556S 557D 558F 559T 573I 574S 575P 576C 578F 600D 601V 632Q 633A 651P 653G 654A 655G 679M 681L 682G 683A 684D 685S 686S 687I 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 947Q 950S 951N 952F 988T 1021R 1022V 1023D 1024F 1027K 1028G 1029Y 1051P 1061P 1071F 1072P 1074E 1075G 1076V 1089R 1103F 1105S 1110V (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acj_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acj_A_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S EEE S B SSS SB EEEEEE TT EEEEEEE SS EE SS EEEEEEESS EEEESS STT EEEEEE:
ExpBur :eeeebeeeeeeeeeebebbebbbbeeeeeeeeeeeeeeeebbbebebebebbebeeebbbbeebebeebbbbbbbbbbebbbbbbbbeebeeebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acj_A_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSSEEEEEEE SS EEE SSS SS EEEE S EEEEEEEEEEEETTEEEEEE EEEE SSS SS BE:
ExpBur :beeebbbbebbbbebbebbbbbbeeeebebebeebbeeeeeeeeeeebeeeebebeeeeeebebbbbbbbbeeeeebbbbebebebeeeeebbebebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acj_A_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE EEEE EEE ---- SEEEEEEE EEEEEEEEE TT EEEEEESSS HHHHHHHHHT SS SS EEEEEEEB EE :
ExpBur :eeeebeeeeebeebbbbbbbbe----ebbbbebbbbbbebeebebbbebbeebebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acj_A_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : B THHHHSS S STT EEEEE SSB STTTS S SEEEESSS SGGGTTS BSSEEEEEEEE SSHHHHSSSS SHHHHS SSS :
ExpBur :eeeeebebeebbebeebbbbbebeebebeebebebeebeeeeeeeeeebeeeeeeebeeebbbbbebbbbbbbbebbebbbeeeeeebbbebbebeeeeb:
Contact : b bbb bb b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acj_A_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTTS TT B S EE SS TT BBTTB TTSTT B EE B SSS GGGS EEEEEEE SSS BB S :
ExpBur :bbbbbbebeeebbeeebbeebebbeeeeeebeeebeeeeeeebbeeeeebebeeeebeebeeebebeeebeeeebbbbbbbbbbeeeeeebbbbbeeeee:
Contact : b b bbb bb bb
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acj_A_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : SS EEEESSS EEEEEEEE SS TTTS EEE TTS EEEEE EEEEEEE SSS EEE SB SSHHHHHHTTT BSS:
ExpBur :eeeeeebbebbbbeeeeebbbeeeeeebeeeebeeeeeeeeeebbbbeeeeebebeeebbebbbbbbbbbeeeeeebbbbbeebebeebeebbeeeebeb:
Contact : b bb bb bbb bbbbb bbbb b bb
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acj_A_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS S B SSS B S B S SEE SSS EE ------------- BEE S SS B S B EEEEEE EE:
ExpBur :ebeeeeeebebeeeeebbbbbbeeeeeeeebebebeeebbbbe-------------ebbbeeeeeeeeeeeeeeeeeebbbebebebeebbbbbbbbbbe:
Contact : bb b bbb b bbbbbbb bbb bbb b
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acj_A_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E HHHHSS S SHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHTT S STT TTTS TTSSSSS HHHHHHHHH ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeeeebebbebeebbbeeeeeeeebebbbbbeeebeee------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acj_A_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHSSS S SSSS SHHHHHHHTTTTT HHHHTTSHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acj_A_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHT STTHHHHHHHHHHHHHHHHHHHHHH SSSS SSTTTGGGT STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS:
ExpBur :eebeeeeeebbebeebbeebbeebeebeeebeeeeebebeebeebeeebeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbb:
Contact : b b b bbb b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acj_A_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : SSSSS SSS EEE EETTEEEEEEE B B SS SSS EE SSS EETTTT EEE SSS EEE GGGS EE S SS SS :
ExpBur :bbeeeebbbebebbbbbbbbbeebbbbbbbbbeeeeeeeeebbebbbeeebbbebeeeebbbbbeeeebbbebbebeeebeeebbeeeeeeeebebebee:
Contact : bbbb bbb b b bb bbb b b b b
queryA 1118:TV:1119
:**:
6acj_A_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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