Protein Model on 6acd_A_1_C_1
(TEMPLATE: 
6acd
)Protein Model on 6acd_A_1_C_1
(TEMPLATE: 6acd
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | 304N 306R 342R 368G 369V 370S 372T 373K 377L 383Y 416F 449R 450P 451F 452E 453R 454D 455I 456S 503L 505N 506A 533T 543K 544R 545F 548F 549Q 550Q 551F 552G 553R 556S 557D 558F 574S 575P 576C 577S 578F 600D 601V 632Q 633A 651P 653G 654A 655G 679M 681L 683A 684D 685S 686S 687I 688A 689Y 693T 694I 695A 697P 929K 943T 947Q 950S 951N 952F 953G 984Q 988T 991T 1021R 1022V 1023D 1024F 1027K 1028G 1029Y 1061P 1071F 1074E 1075G 1076V 1089R 1103F 1105S 1110V (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acd_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acd_A_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S S EEE TT SSS S EEEEEEEE SS EEEEE TT EE S EEEEEEESSS EEEESSSSTTSEEEEEE:
ExpBur :eebeeeeeeeeeeeebebbebbbbeeeeeeeeeeeeebeeebbbbebebebbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acd_A_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSSEEEEEEE S EEE SSS S EEEEEEEE S SSB EEEEEEEEEETTEEEEEEEE B SSS S E:
ExpBur :beeebbbbbbbbbeebebebbebeeeebebeeebbeeeeeeeeeeeebeeeebebeeeeeebebbbbbbbbeeeeebbbbebeeebeeeeebbeeebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acd_A_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE EEEE EEE ---- S EEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT SS SEEEEEEEEEB EEEE :
ExpBur :eeeebeeeeebeebebbbbbbe----ebbbbebbbbbbebeebebbbebbeeeebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbb:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acd_A_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr :S B THHHHSS S STT EEEEE SEE TTTS S SEEEESSS SGGGGGS BSSEEEEEEEE SSTTTT SSS SHHHHT SSS :
ExpBur :eeeeebebeebbeeeebebbbebeeeebeebebebeebeeeeeeeeeebeeeeeeebeeebbbbbbbbbbbbebebeebbbeeeeeebbbebbebbeeeb:
Contact : b bbb bb b b b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acd_A_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTT SS BTT EEE SS TT S B TTS TTSTT B EEE B SSS GGG EEEEEEE TTSSS EE S :
ExpBur :bbbbbbbbeeeebeeebbeebebbeeeeeebeeebeeeeeeebbeeeeeeebeeeebeebeeebebeeeeeeeebbbbbbbbbbeeeeeebbbbbeeeee:
Contact : bbbbbbbb b bb
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acd_A_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : BSS EEEE SS EEEEEEEE TT SSS EEEETTTEEEEEE SEEEEEEEES SSS S EEE S SSHHHHHHHTT BSS:
ExpBur :eeeeeebbebbbbeeeeebbbeebeeebeeeebeeeeeeeeeebbebeeeeebebeeebbebbbbbbbbbbeeeeebbbbbeebebeebeebbeeeebeb:
Contact : b bbb bbbbbb bbb bbbbb bb
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acd_A_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS EE SSS EES EEESS S SEE SSS EE ------------- EEE S SS B SSEE EEEEEEE EE:
ExpBur :ebeeeeeeeebeeeeebbbbebeeeeeeeebebebeeebbbbe-------------ebbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbbbbe:
Contact : bb b bbb b b bbbbbbb bbb b
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acd_A_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E TTTSSS S SSHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SSSSSSS HHHHHHHHHS ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbbbbeeebeee------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acd_A_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHHSS S SSSS SHHHHHHHTTTTT THHHHTTHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeebeebbeebbebbeebb:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acd_A_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS STTHHHHHHHHHHHHHHHHHHHHHHS SSSSSSSTTTTTTT STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:
ExpBur :eebeeeeeebeebeebbeebbebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb:
Contact : b b b bbbb b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acd_A_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : STTTSSSS EEEEEE SSEEEEEEE EE B B S BSSSSEEE SS EETTTT EE SSS STT EEES TTS SS :
ExpBur :bbeeeebbbebebbbbbbbbbbebbbbbbbbbebeeeeeeebbebbbeeeebbebeeeebbbbbeeeebbeebbebeeebeeeebeeeeeeeebebebee:
Contact : bbbb bbb b b bbb b b b b
queryA 1118:TV:1119
:**:
6acd_A_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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