Protein Model on 8h15_A_1_B_1
(TEMPLATE: 
8h15
)Protein Model on 8h15_A_1_B_1
(TEMPLATE: 8h15
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [968 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [958 aa] | Spike glycoprotein :SPIKE_SARS | 304N 306R 368G 369V 370S 372T 373K 377L 383Y 450P 451F 452E 453R 455I 502E 503L 505N 533T 535T 543K 544R 545F 546Q 548F 549Q 550Q 551F 552G 553R 555V 556S 557D 558F 575P 577S 578F 600D 632Q 651P 654A 655G 681L 682G 683A 684D 685S 687I 688A 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 946K 947Q 950S 951N 952F 953G 988T 999E 1020K 1021R 1022V 1023D 1028G 1054E 1056N 1059T 1060A 1061P 1071F 1072P 1089R 1103F 1105S 1110V 1112I (identity: 100.0 %/88.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h15_A_1 identity=88.7% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** **************** ***********************************:
8h15_A_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEXXNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr : EEEETT EE SS SEEEEEEEEE TTEEEEE ------- EE SS EEEEE -- EEEEEEESSSSTTS EEE B SS EEEEEE :
ExpBur :eebebbebbbbbbeeeeeeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbe--eebebbbbbeebeeebebbbbeeeeeeebbebbbb:
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
:** ************ *********************** ***********************:
8h15_A_1 121:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXXHLREFVFKNKDGFLYVYKGYQPIXXXXDLPSGFNTLKPIFKLPLGINITN: 220
SecStr : ---------------------- S EEEEE -------------- EEEEEEEEETTEEEEEEEEE ---- EEEEEEEE SE:
ExpBur :ee----------------------eeeeeebeeeee--------------ebebbbbbeeeeebebbebebee----ebeeeebbbeeeeebebebebee:
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:****** *********************************************************************************:
8h15_A_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr :EEEEE ------------- EEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S SEEEEEEEEEB EEEE B HHHHS:
ExpBur :bebeee-------------ebbbbbebeebebbbebbeebebeebbbbebebbbebbbeeeebebeebeeebeebebeeeeebbbbbeeeeebebeebbe:
Contact : b b
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:*********************************************************************************************** :
8h15_A_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTXXXXX: 420
SecStr : S GGG EEEEE SBB TTTSSSS SEEEEESS GGGTTT EES EEEEEEEE STTSGGGSTT SSHHHHT TT EEEEEEE -----:
ExpBur :eeebebbbebeeeebeebbbebbebeeeeebeeeebeeeebeebeeebbbbbebbbbbbebebbebbebeeeeebbbebbebbeebebbbbbbee-----:
Contact : bbb bb b b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
: ****************** ***** *****************************************:
8h15_A_1 421:XXXXXXXYKYRYLRHGKLRPFERDIXXXXXXXXXXXXXXXXXXXXXPLNDYXXXXXXXXGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr :------- EEE SS TT --------------------- EEE -------- EEEEEEEE SSS EE S SSEEEEEET:
ExpBur :-------eebbeeeeeebeeeeeee---------------------eeeee--------eeeebbbbbbbbeeeeeebebbbeeeeeeeeeeebbebbbb:
Contact : bbbb b bb b
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h15_A_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620
SecStr :TEEEEEEEEE TT EEE TTS EEEEE TTT EEEEE EEEEEEEES TTT S EEEEET THHHHHHHHTT BSS SS S EEE:
ExpBur :eeeeebbbeeeeeebeeeebeeeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeebbbbbeebebeebeebeeeeebebebeeeebeeeeee:
Contact : b b bbbb bbbbbb bbbb b bb b
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h15_A_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr : SSEEEET EE S SEE SSSEEEEEE -------- EEEEEE SSEEE EEEEEEEEEEEE EEEE HHHHHTSS SH:
ExpBur :bebbbbbebeeeeeeeeeebebeeebbbbeee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee:
Contact : b b bb bbbbb bbbbb bbb b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:******************************************************************************** ******* *:
8h15_A_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXKQYGECLXXXXXXD: 820
SecStr :HHHHGGGG SSHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTSS TTSSSS HHHHHHHHHS ------ ------ :
ExpBur :beebbeeeeebbeebeeebeebbebbbebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeeebebbbbbbebbee------eebbeee------e:
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
:****************************************************************************************************:
8h15_A_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr : TT EEEE SS HHHHHHHHHHHHHHHHHHTTTTTTSS HHHHHHHHHHHHT THHHHTSHHHHHHHHHHHHHHHHHHHHTT HHH:
ExpBur :eeeeeeebbbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeeb:
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:****************************************************************************************************:
8h15_A_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebbeebeebbeebbeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbeebeeeebbbeeeb:
Contact : b b bb bbbb b b bbbb b
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1121
:*******************************************************************************************:
8h15_A_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1111
SecStr :EEEEEEEETTEEEEEEEEEEEE EEEEES EESSSSEEEESSSEEEE SSSEEEE TTS B BSSSEEE S TTSSTT EE B :
ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbeebbeeeebbeeebeeeeebeeeeebeeeebee:
Contact : b b bbb bb b b b b b
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[assembly_id:1]
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