Protein Model on 6cs1_A_1_B_1
(TEMPLATE: 
6cs1
)Protein Model on 6cs1_A_1_B_1
(TEMPLATE: 6cs1
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (B) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
| 2 | b | B 1 (C) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | 304N 306R 535T 543K 544R 545F 548F 549Q 550Q 551F 552G 553R 554D 555V 556S 557D 558F 573I 574S 575P 578F 600D 630Q 632Q 648C 651P 653G 654A 655G 656I 679M 681L 682G 683A 684D 685S 686S 687I 688A 689Y 690S 691N 692N 693T 694I 695A 697P 929K 943T 947Q 950S 951N 952F 953G 984Q 988T 991T 995I 999E 1021R 1022V 1023D 1027K 1028G 1029Y 1054E 1056N 1059T 1061P 1071F 1072P 1089R 1100D 1103F 1104V 1105S 1111V 1112I (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6cs1_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6cs1_A_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr : SS EEEE TT B S SEEEEEE B TT EEEEEEE TT EEE TTEEEEEEEESS EEEEEEESS STTS EEEEE:
ExpBur :eeeebeeeeeeeeeebebbebbbbbeeeeeeeeeeeeeeebbbbbeeebbbbebeeebbbbeebebeebbbbbbbbebbbbbbbbbbeebeeeeebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6cs1_A_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr :E SSEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEE SS B E:
ExpBur :bebebbbbebbbbebbeebbbbbeeeeeebeebbbeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebbbbebeeebeeeeebbeeebebe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:*********************** **************************************************************************:
6cs1_A_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr :E EE EEEEEEEEE --- SEEEEEEE B EEEEEE TTS EEEEEESSSSHHHHHHHHHT SS SEEEEEEEEEE EEEE :
ExpBur :eeeebebebebeebbbbbbbbbe---eebbbebbbbbbebeebebbbebeeeeebeebbbbbbebbbebebeeeeeebeebeeebeebebeeeeebbbee:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:************************************************** ***********************************************:
6cs1_A_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr : S SB GGGTTS S STT B EE SEE HHHHT S B EE --- THHHH S EE EEEEEEGGGSTTSSSS TTTHHHHT SS :
ExpBur :eeeeebebeebbebeebebbbebeebeeeebebbbebbeeeeebeeeeee---eeeebebebeebbbbbbbbbbebbebbbeeeeeebbbebbbbbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:************************************************************************************* *********:
6cs1_A_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr : EEEEEE TTTS SS BTT EEE SS TT B SSS TTSTT B EEE B SSS STTSEEEEEEE B ------ EE :
ExpBur :bbbbbbbbeeebbeeebbeebebbebeeeebeebeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbee------ebebeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:*********************************************************** ****************************************:
6cs1_A_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr : SS EEEEESS EEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEES TTT EEEEET SHHHHHHHHTT EES:
ExpBur :eeeeeebbebebeeeeeebbbeeeeeebeeeeeeeeeeeeebebbebeeeeebbebeebbebbbbbbbbbbeebeeebbbbeebebeebeebbeeeebee:
Contact : b bbb bbbbbbbbbbb bbb b b
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** **********************************************:
6cs1_A_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr : SS TT EEE SSEEEES EEEEEEE SEEEETTEEEEEE -------- EEEEEEE S SSEEEEEEEEEEEEEEEEE EE:
ExpBur :ebeeeebeebeeeeeebbbbebeeeeeeeeeebebeeeebbbeeee--------ebbbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbbbbe:
Contact : b b b b bbbb b bbbbbbbbbbbbbbb b
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************** :
6cs1_A_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr :E HHHHHTSS HHHHHHHGGG S TTHHHHHHHHHHHHHHHHHHHHHTT S S EETTEE TTTS TTSTT S HHHHHHHHTT --------:
ExpBur :bebeebbeeeeeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeeeeebeebeeebbebeebbbeeeeeeeebebbebbeeeee--------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:****** ***************************************************************************************:
6cs1_A_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr : B B ------- B SSSEEE SS HHHHHHHHHHHHHHHTTTGGGTTTSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHH:
ExpBur :eebeee-------eeeeeeeebbebeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebbeebbeeeeeebbeebbebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6cs1_A_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr :HHHHH SSHHHHHHHHHHHHHHHHHHTTSS TTSS SSHHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS:
ExpBur :eebeeeeeebeebeebeeebeebbeebbeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbe:
Contact : b b b bbbb b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6cs1_A_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr : STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS B SSSEEEEEESSSSSS EE :
ExpBur :bbeeeeebbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeeeebbeeeeeebbbeebbebeeebeeebbeeeeebeeeeeeeeb:
Contact : bbb bbb b b b b bb b b bbb bb
queryA 1118:TVY:1120
:***:
6cs1_A_1 1105:TVY:1107
SecStr : :
ExpBur :ebe:
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[assembly_id:1]
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