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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1054 aa] | Spike glycoprotein | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [1053 aa] | Spike glycoprotein | 301Q 303S 341E 342R 368G 369V 370S 372T 373K 377L 383Y 416F 444R 450P 451F 452E 453R 454D 455I 456S 458V 502E 503L 504L 505N 531G 533T 534G 535T 543K 544R 545F 546Q 548F 549Q 550Q 551F 552G 553R 554D 556S 557D 558F 559T 573I 574S 575P 577S 578F 579G 600D 601V 602N 632Q 633A 651P 652I 653G 654A 655G 656I 657C 678T 679M 681L 682G 683A 684D 685S 686S 687I 688A 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 947Q 950S 951N 952F 953G 977R 984Q 985S 988T 991T 992Q 995I 999E 1021R 1022V 1023D 1027K 1028G 1029Y 1051P 1056N 1061P 1071F 1072P 1074E 1076V 1089R 1103F 1104V (identity: 100.0 %/96.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5x58_A_1 identity=96.8% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :*********************************************************** ****************************************: 5x58_A_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S B EEE EEEEE SS S EEEEEEEE TT EEEEEEE SSB EE TT EEEEEEESS EEEESSSSSSS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbebeeeebeeeeeebebbbbbbebebbbbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 5x58_A_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SSEEEEEEEEE S BEEE TTT EEEE S S EEEEEEEEEEEE S SS EEEEEEEEEETTEEEEEEEE SSS EEEEE: ExpBur :beeebbebbbbbbebbebbbbebeeeebeeeeeebeeeeeeeebeeebeeeebebeeeeeebeebbbbbbbeeeeebebbebeeebebeeebbeebbbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************** *************************************************************************: 5x58_A_1 205:PIFKLPLGINITNFRAILTAFSXXXXTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE EEEE B B ---- SEEEEEEE EEEEEEEE SSS EEEETTSSHHHHHHHHHT SS SEE B EEE : ExpBur :eeeebebebebeebbbbbbbbe----ebbbbebbbbbbebeebebbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbebeeebebbeb: Contact : b b queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 5x58_A_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :SS EE GGGTTTT S STT EEEEE SEE STTTSS SEEEESSS SSTTTTS BS EEEEEEEE HHHHHHSSBS TTSSSTTTS B SSS : ExpBur :eeeeeebbeebbeeeebebbbebeeeebeebbbebeebeeeeebeeeeebeeebeebeeebbbebebbbbbbbeebbebbbeeeeeeebbebbebbeeee: Contact : bb bbb bb b b b queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 5x58_A_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 504 SecStr : EEEEEE TTTT SS S B SS TT B SSS TTSTT B SB TTS GGGS EEEEEEE S SS B : ExpBur :bbbbbbebeeebbeeebbeebebbeeeeeebeeeeeeeeeeebbeeeeebeeeeeebeebbeebebebeeeeeebbbbbbbbbbeeeeeebbbbbeeeee: Contact : b bbbbbbb b bbbb queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 5x58_A_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEE SS BEEEE TT EEESSSSSEEEEE TTT EEEEE B EEE TTT EEEE S SHHHHHHHTTT SS: ExpBur :eeeeebbbebbbbebeeebbbeebeeebeeeebbbeeeeeebebbbbbeeeeebebeebbeeebbbbbbbbeebeeebbbbbebebeebeebeeeebbeb: Contact : b bbb bbbb bbbbbbb bbbb bbb bbb bbb queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 5x58_A_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS S TT EESS EE S SEEEETTEEEE --------- EEEE S SSEEEEES B EEEEEEE B : ExpBur :ebeebeeeeeebeeeebbbbebeebeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbb: Contact : bb bbbbbbb bb bbbbbbbbbbb bbb b queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 5x58_A_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr : HHHHHHSS SHHHHHHGGG SSSSSHHHHHHHHHHHHHHHHHHHHTT SS S BTTB S SSS SSSS HHHHHHHHS --------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeebbeebbebbbebbeebbeebeeeeeebeebebebbebebbbeeeebeeebbebbebbbeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 : ****************************************************************************************: 5x58_A_1 805:XXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr :------------ TT B SS HHHHHHHHHHHHHHHHHT SHHHHSS HHHHHHHHHHHHT THHHHHSHHHHHHHHHHHHHHHH: ExpBur :------------eeeeeeeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :****************************************************************************************************: 5x58_A_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHHS SHHHHHHHHHHHHHHHHHHHHHTSS TTSS S HHHHHTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS: ExpBur :eebeeeeebeeebbebeeebeebbeebeeebeeeeebeeeebeebeeebeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbe: Contact : b b b bbbb b bb b bb b b queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1104 :***************************************************************************************: 5x58_A_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1091 SecStr : STTTS SSSEEE EEEETTEEEEEEEE B EEEEEE SSB SSS BEESS EEETTEEEB TTS B STTEE : ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebeebeeeeeebeeeeebbbbeeeeeebbbbebbebeeeeeeeebee: Contact : bbb bbb b b b bb b b b bb |