Protein Model on 4dba assembly_id=2
(TEMPLATE: 
4dba
assembly_id:2
)Protein Model on 4dba assembly_id=2
(TEMPLATE: 4dba
assembly_id:2
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | C 1 (C) | polymer(polypeptide(L)) [196 aa] | Designed Armadillo repeat protein, YIIM3AII | 299V(T) 302L 303G(N) 307L(M) 310V(Q) 311T(L) 314L(T) 315R 317I(F) 318G(S) 320I 321V(L) 322T(S) 324T(G) 325D(N) 327Q 328T(I) 330V(A) 331V 334A 335G 336A 339V(A) 343L 350N(Q) 351I 354E 355A 357W 358T(A) 361N 362I 364A(S) 365G 366R(G) 367Q(N) 406S 409T(N) (identity: 44.7 %/38.1 %) | |
| 2 | b | A(IMA1_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [196 aa] | Designed Armadillo repeat protein, YIIM3AII | |
| 3 | c | H 1 (D) | non-polymer(GOL) | GLYCEROL | 399W (identity: 100.0 %/38.1 %) | |
| 4 | d | I 1 (D) | non-polymer(GOL) | GLYCEROL | 399W 439V(E) 442D(W) (identity: 33.3 %/38.1 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:4dba_D_1 identity=38.1% |
queryA 295:VPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQ: 394
: ** * * * * ** * ******* ** * * ** * *** * *** * * * ** ** :
4dba_D_1 14:LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL: 113
SecStr :HHHHHHHTT S HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHHTT SSHHHH:
ExpBur :eeebeebeeeeeeeeeeebeeebeeeeeeeeeeeeeebeeeebeeebeebebeeeeebeebbeebbebbeeeeebbeebbebebbeebbebbeeeeeebb:
Contact : a aa a aa aa aa aaa aa aa aa aaa a a aa aa aa aa aaaa
queryA 395:KEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEK: 494
: ** ** * *** *** * * ** * * * *** * * * * * * * ** **** * **:
4dba_D_1 114:QEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQKQAV--KEAGALEKLEQLQSHENEKIQKEAQEALEK: 206
SecStr :HHHHHHHHHHTTS H-HHHHHHHHTTHHHHHHHTTS S HHHHHHHHHHHHHHHTS---- HHHHHHH--HTTTHHHHHHHTTT SSHHHHHHHHHHHHH:
ExpBur :eebbebbbbbbebbe-ebbeebbeeebbeebbebbebeeeebbeebbebbbbbbeb----eeebeeeb--eeeebeeebeebeebeeeebeebbeebbee:
Contact : c a a d d
Contact : d
queryA 495:Y: 495
: :
4dba_D_1 207:L: 207
SecStr :H:
ExpBur :b:
|
[help]