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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(IL6RA_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [298 aa] | Interleukin-12 subunit beta :IL12B_HUMAN | |
2 | b | Y 1 (Y) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 192M 194V(D) 201K(Y) 203S(N) (identity: 25.0 %/27.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5njd_A_1 identity=27.0% |
queryA 39:PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG--------------TVHLLVD--VPPEEPQLSCF: 122 :** * *** ** * * * * * * * * * * * * * * * * : 5njd_A_1 42:PGEMVVLTCDT--PEEDG-ITWTL------DQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCE: 132 SecStr : EEEEEE --S SS- EEEE------TTEEEEEEESSEEEEEE SGGG EEEEEEETTEEEEEEEEEEEEEETTEE SB SSSSS EEE: ExpBur :eeeebebebeb--eeeee-bebbb------eeeeeeebeeeebebebeeeeebbebbbbbeeeeebebebbbbbeeeeeebeebbeeeeeeeeebbbbbe: Contact : b b queryA 123:RKSPLSNVVCEW----------------GPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQ: 206 : * * * * * * * ** * * * * * * * * * * : 5njd_A_1 133:AKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEY----EYSVECQEDS---ACPAAEESLPIEVMVDAVHKLKYENYTS: 225 SecStr :BSSSSSEEEEEEEES SSEEEEEEEEE SSS EEEEE EEEEEEEETTEEEE----EEEEEEEESS--- TTS S EEEEEEEEETTEEEEEEE: ExpBur :bebbebebebebbbebeeebebebebbbbeeeeeebebeeeeeeeeeeeeeeebb----bbebebebee---eeeeeebeeebebebbbbbeebbbebee: Contact : b b b b queryA 207:TFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS--SFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWS: 304 : * * **** * * * * * * * * * ** *** **: 5njd_A_1 226:SFFIRDIIKPDPPKNLQLKPLKXXXQ-VEVSWEYPDTWSTPHSYFSLTFCVQVQXXXXXEKKDRVFTDKTSATVI----CRKNASISVRAQDRYYSSSWS: 320 SecStr :EE HHHHB EEEEEEE --- -EEEEEE SSS S TTTS EEEEEEE ----- EEEEESSSEEEE ---- TT EEEEEEEESSS : ExpBur :ebebeebbebeebeebeeeeee---e-bbbebebbeebbeeeeebbbbbbbbbe-----eebeeeebeeeeeebe----beeebebbbebbbeeeebeeb: queryA 305:EWS: 307 :** : 5njd_A_1 321:EWA: 323 SecStr : E: ExpBur :eeb: |