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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
FOCUSED SITES | template(6acd_B auth_asym_id:B) | ||||||
SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
766 | Q | 766 | 766 | Q | T | e | 33.2 |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6acd_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6acd_B_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 SecStr : S S EEEE TT SS S EEEEEEEE TT EEEEE TT EE S EEEEEEESS TT EEEESSSSTTSEEEEEE: ExpBur :eebeeeeeeeeeeeebebeebbbbebeeeeeeeeeeebebbbbbbebebebbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbeebeeebebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6acd_B_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 SecStr :E SS EEEEEEE S EE TTT BTT S EEEEEEEE S SSB EEEEEEEEEETTEEEEEEE B SSS S E: ExpBur :beeebbbbbbbbbebbebebbebeeeebeeeeebbeeeeeeeeeeeebeeeebebeeeeeebeebbbbbbbeeeeebbbbebeeebeeeeebbeeebbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************** **************************************************************************: 6acd_B_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 SecStr :EEEEE EEEE EE ---- S EEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT SS SS EEEEEEEB : ExpBur :eeeebebebebeebbbbbbbbe----ebbbbebbbbbbebeebebbbebbeeeebeebbbbbbebbbebebeeeeeebeebeeebeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 6acd_B_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 SecStr : B THHHHHS S STT EEEEE S B SSTTTS S SEEEESSS STTGGGS BSSEEEEEEEE SSTTTT SSS TTHHHHT SS : ExpBur :eeeeebebeebbeeeebbbbeebeeeebeebebebeebeeeeebeeeebeeeeeeebeeebbbbbebbbbbbebebeebbeeeeeeebbbebbebeeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 6acd_B_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 SecStr : EEEEEE TTTT TT BTT EE SS SS TTS TTSTT SEE B SSS GGGS EEEEEEE TTSSS BB S : ExpBur :bbbbbbebeeeebeeeebeebebbebeeeebeeebeeeeeeebbeeeeeeebeeeebeebeeebebeeeeeeeebbbbbbbbbbeebeeebbbbbeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 6acd_B_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 SecStr : BTS EEEE SS EEEEEEEE SS SSS EEEETTTEEEEEE SEEEEEEE SSS EEE SS SSHHHHHHTTT BSS: ExpBur :eeeeeebbebbbbeeeeebbbeeeeeebeeeebeeeeeeeeeebbebeeeeebebeeebbebbbbbbbbbeeeeeebbbbbeebebeebeebbeeeebeb: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :******************************************* ********************************************: 6acd_B_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 SecStr : SS S EE SSS EES B SS S EE SSS EE ------------- BEE S SS B SEE EEEEEEE EE: ExpBur :ebeeeeeeeebeeeeebbbbebeeeeeeeeeebebeeebbbbe-------------ebbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :********************************************************************************************** : 6acd_B_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817 SecStr :E TTTSSS SSSSHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHHTT SS S SSS TTTS SSSS SS HHHHHHHHHS ------: ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbebbeeebeee------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 : **************************************************************************************: 6acd_B_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHHSS S SSSS SHHHHHHTTTTTT THHHHTSHHHHHHHHHHHHHHHH: ExpBur :--------------eeeeeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :****************************************************************************************************: 6acd_B_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 SecStr :HHHHS STTHHHHHHHHHHHHHHHHHHHHHHS SSSS SSTTTTTTT SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS: ExpBur :eebeeeeeebeebeebbeebbebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6acd_B_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 SecStr : TTTS SS EEEEEE SSEEEEEEE EE B B S BSSSSB SS EETTTT EE SSS EE STTS BS SSS SS : ExpBur :bbeeeebbbebebbbbbbbbbbebbbbbbbbbeeeeeeeeebbebbbeeeebbebeeeebbbbbeeeebbeebbebeeebeeebbeeeeeeeebebebee: queryA 1118:TV:1119 :**: 6acd_B_1 1118:TV:1119 SecStr : : ExpBur :be: |