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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | X 1 (5X) | polymer(polypeptide(L)) [583 aa] | Probable ATP-dependent RNA helicase DDX23 :DDX23_HUMAN | |
2 | b | R 1 (5A) | polymer(polypeptide(L)) [2212 aa] | Pre-mRNA-processing-splicing factor 8 :PRP8_HUMAN | 504H(Q) (identity: 0.0 %/34.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6qw6_X_1 identity=34.0% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * ** ** ** * * ******** ** ** : 6qw6_X_1 390:IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL---------------------------------------: 450 SecStr : S TTTS HHHHHHHHHHT S HHHHHHHHHHTTT EEEE TTSSHHHHHHHHHH---------------------------------------: ExpBur :bbebeebebeeebeebbeeeebeebeebbbbbbbbbebbbbbbbbbeeebebbbbbbbbbb---------------------------------------: queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 6qw6_X_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------: 286 : : 6qw6_X_1 451:--------------------------------------------------------------------------------------VWITTLPKIDRIEE: 464 SecStr :--------------------------------------------------------------------------------------HHHHHS HHHH S: ExpBur :--------------------------------------------------------------------------------------bbbbebeeeeeeee: queryA 287:----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD: 382 : * * * * **** * * * * *** ** * * ** ***** * * ** ****** * : 6qw6_X_1 465:SDQGPYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGXEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP: 561 SecStr :S SEEEE SSHHHHHHHHHHHHHHHGGGT--- EEEE SSS HHHHHHHHHT - EEEE HHHHHHHHHTTSS TT EEEESSHHHHHHTT HH: ExpBur :eeeebbbbbbbbeeebbeebeeebeebbeebe---bebbbbbeeeeeeebeeebeee-bbbbbbbebbbebbeeeebebeebbbbbbbbbbebbeeeebe: queryA 383:FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG--: 478 : * * * * * * * * *** * * ** : 6qw6_X_1 562:DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYLR----------RPAVV: 627 SecStr :HHHHHHTTS GGGS SSGGGG HHHHHHHHHTGGG EEEEEES --------- HHH---------------HHHHHHH S----------S EEE: ExpBur :ebeebeeebeeebbbeeeeebeeeeebeebbeebeebebbbbbbbee---------eeebb---------------eebbeebbe----------eebbb: queryA 479:----ANSPEMWSEAIKILKGEYAVR----AIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL: 569 : * * * * * * ** * * *** * ** * * * * * * * *: 6qw6_X_1 628:YIGXAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG---------YNACTLXXXXXXXXREFALSNLKAGAKDIL: 718 SecStr :EE - HHHHSEEEEEE GGGHHHHHHHHHHT S EEEE SSHHHHHHHHHHHHHTT--------- EEE -------- HHHHHHHHHTS EE: ExpBur :eee-eeebbeebebebeebeeeebeeebeebbeeeeeebbbbbbeeeeebeebbeebeeee---------bebbee--------eeebbeebeeeeeebb: Contact : b queryA 570:ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630 : *** *** * * * * ***** *** * ** * * * : 6qw6_X_1 719:VATDVXXXXIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL: 779 SecStr :EE ---- SEEEESS SSHHHHHHHHGGG SSSS EEEEEE GGGGGGHHHH: ExpBur :bbbee----eeeeebebbbbbbbbeebeebbebbeebbeeeeebebbbbbbeebeebbeeb: |