[pdbjlvh2]Protein Model on 8xxn_KA_1_LA

Protein Model on 8xxn_KA_1_LA_1 (TEMPLATE: 8xxn )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	KA 1 (4A)	polymer(polypeptide(L)) [342 aa]	Eukaryotic initiation factor 4A-I :IF4A1_HUMAN
2	b		LA 1 (CD)	polymer(polypeptide(L)) [347 aa]	Programmed cell death protein 4 :PDCD4_HUMAN	348G 349R 378Q(R) 379G 409T 410L(M) 514R(N) 594D(T) 595E(N) 596K(R) 638C(F) (identity: 36.4 %/32.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8xxn_KA_1 identity=32.7%

queryA       249:FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP: 347
                : *   *      *  *   *          *      *  **   * **** *          *           ***   *     *      * ****:
8xxn_KA_1     64:LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTP: 159
SecStr          :S    SS EEEE  TT-TTTSHHHHHHHHTT  TT  S  EEEE S HHHHHHHHHHHHHHHTTTT  EEE---   STTHHHHHHHHHHT  SEEEE H:    
ExpBur          :eeeeeeebeeeeeeee-eeeeeeebbeeeeeeeeeeeebbeeebbeeeeebeebbebeeeebeeeeeeeee---eeeeeeeeeeeeeeeeeeebbebbeb:    

queryA       348:GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP: 447
                :**  *      *        ******  ** *  * *          *      **   ***  * **     * *  *     * *             :
8xxn_KA_1    160:GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN: 252
SecStr          :HHHHHHHHTTSS  SS  EEEEE HHHHHHHT HHHHHHHHHHS TT ------EEEEEES   H-HHHHHHHHH SS EEEEE     BSTTEEEEEEE:    
ExpBur          :ebebebeeeebeeeeebeebeeebbebbeeeebeebeeeeeeebeeeb------beeeebeeeee-ebeeeeeeeeeeeebeeeeeeeeeeeebeebbee:    
Contact         :bb                            bb                             bb                                     

queryA       448:VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG: 547
                :*        **                        * *      *   *    *      ** **  *    * *                 *     * :
8xxn_KA_1    253:V--------ER------------------------EEWK--LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHX: 304
SecStr          : -------- S------------------------HHHH--HHHHHHHHHHHT S-----SEEEEES HHHHHHHHHHH---------HHTT S EE  -:    
ExpBur          :b--------ee------------------------eebe--eeeeeeeeeeeeee-----eeeebeeeeeebeeeeeeb---------eeeeeeeeeee-:    
Contact         :                                                                  b                                 

queryA       548:DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :      *      *  *  * ** **  *****   *  ***  **    ** ***** **    * **  *  *                ***   *:
8xxn_KA_1    305:XXXXXXRDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGXKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE: 397
SecStr          :------ HHHHHHHHSSSS EEEEEHHHHHHS  TT SEEEESS  S HHHHHHHH B SS  - EEEEEEE HHHHHHHHHH-----HHHHT  EEE:    
ExpBur          :------eeeeeeeeeeeeeeeebbeeeeeeeeeeeeeebeebeeeeeeeebbeeeeebeeeee-eeebeeebeeebeeeeeee-----beeeeeeeee:    
Contact         :                                              bbb                                         b

Protein Model on 8xxn_KA_1_LA_1 (TEMPLATE: 8xxn )

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