Protein Model on 2xb2_K_1_L_1
(TEMPLATE: 
2xb2
)Protein Model on 2xb2_K_1_L_1
(TEMPLATE: 2xb2
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | K 1 (X) | polymer(polypeptide(L)) [390 aa] | EUKARYOTIC INITIATION FACTOR 4A-III :IF4A3_HUMAN | |
| 2 | b | L 1 (Y) | polymer(polypeptide(L)) [143 aa] | PROTEIN MAGO NASHI HOMOLOG :MGN_HUMAN | 26T(S) 27D(A) 31E(R) 47E(Q) 412S(P) 413F(H) 414D(E) 417K(E) 433G(R) 434E(D) 435D(E) 437V(T) 439D(E) 445V(F) 596K(R) 597Q(E) 609A(Y) 610E(G) 624E(I) 625K(R) 628Y(R) 629H(D) 637G(Q) 638C(Y) 640N(S) 641T 642R(Q) 644K(D) 645E (identity: 6.9 %/34.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:2xb2_K_1 identity=34.4% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
: * ** * ** * * * ** * *** *** * * :
2xb2_K_1 39:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------: 98
SecStr : SGGG HHHHHHHHHTT S HHHHHHHHHHTTT EEEE STTSSHHHHHHHHHHH----------------------------------------:
ExpBur :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbbbebbbbbbbbe----------------------------------------:
Contact : bb b b
queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
: :
2xb2_K_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
: *** :
2xb2_K_1 99:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 113
SecStr :-------------------------------------------------------------------------------------T TTS S EEEE :
ExpBur :-------------------------------------------------------------------------------------bbeeeeeebbbbbbb:
queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
:* **** * * *** * * * ***** * * ******* * * * * :
2xb2_K_1 114:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 210
SecStr :SSHHHHHHHHHHHHHHTGGGT--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTT S TT EEEEETHHHHSSTTTHHHHHHHHTTS S:
ExpBur :bbebbbebbbebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebeebeeebee:
queryA 394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
: * ** **** * * * * * * ** * * * :
2xb2_K_1 211:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 269
SecStr :S ------EEEEEES - HHHHHGGGTT SS EEE TTT S TTEEEEEEEE--------SS------------------------HHHH--HHHHH:
ExpBur :eb------bbbbbbbbb-beebbeebeebbeebbbbbbeeeebbeeebebbbbeb--------ee------------------------eeeb--bebbb:
Contact : bbb b bbb b b b
queryA 494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
: * * ** *** ** * * * *** ** * * * ** *** *** * * ** **:
2xb2_K_1 270:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 355
SecStr :HHHHHHTTS----- EEEE S HHHHHHHHHHH---------HHTS EEE TTS HHHHHHHHHHHHHTSS EEEE GGGTSS TT EEEESS :
ExpBur :ebbebbeeb-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebbbbbbbbbb:
queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
: * ***** ** * * ** * * * *:
2xb2_K_1 356:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 402
SecStr :SSHHHHHHHHTTSSGGG EEEEEEEEGGGHHHHHHH-----HHHTT EE:
ExpBur :eeeebbbbbbbbbbbeeeebbbbbbbeeeeeeebeeb-----beebebebee:
Contact : bb bb bb bb bb bbb bb
|
[assembly_id:1]
[help]