CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | J 1 (D) | polymer(polypeptide(L)) [391 aa] | ATP-dependent RNA helicase has1 :HAS1_SCHPO | |
2 | b | GA 1 (i) | polymer(polypeptide(L)) [85 aa] | 60S ribosomal protein L36-B :RL36B_SCHPO | 357G(K) 358K(G) 360N(V) (identity: 0.0 %/41.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8eti_J_1 identity=41.9% |
queryA 13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112 :* * ** * ** *** * * *** ** ****** ** ** * * : 8eti_J_1 100:IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLY-----------------------------------------------: 152 SecStr :HHHHHHHHT S HHHHTTHHHHHTT TTSSHHHHHHHHHHHHHH-----------------------------------------------: ExpBur :eeebeeebeeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeeeeeeebeeeebe-----------------------------------------------: queryA 113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212 : : 8eti_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT--KFLP-NAPKALIVEPSRELAEQTLNNIKQF: 309 : ** * * * * **** * * : 8eti_J_1 153:--------------------------------------------------------------------ALKFKPRNGTGVIIISPTRELALQIFGVAKEL: 184 SecStr :--------------------------------------------------------------------HHT TTS EEEE S HHHHHHHHHHHHHH: ExpBur :--------------------------------------------------------------------eeeeeeeeebebeeebeeeeebeeebeeeeee: queryA 310:KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA: 408 : ** *** * * ** * **** ** * * * ** **** * * * * : 8eti_J_1 185:LKYHHQT---FGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP----------------: 265 SecStr :GGGS S ---EEEE SSS TTTTHHHHTT SEEEE TTTTHHHHTT SS TT SEEEE HHHHGGGT TTHHHHHTTTS ----------------: ExpBur :eeeeeee---eeebeeeeeeeeeeeeeeebbbebbbbeebeeeeeeeeeebeeeeeeeebeeeeeebeeeeeeebeeeeeeeee----------------: Contact : bb b queryA 409:TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ: 508 : : 8eti_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 509:AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC----------------------------------------------------------------: 544 : : 8eti_J_1 266:------------------------------------SENRQTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQGYVVVDSDKRFLLLFS: 329 SecStr :------------------------------------ TT EE --------------------------------------- EEEE SSSHHHHHHH: ExpBur :------------------------------------eeebeee---------------------------------------eeebeebeeeebebeeee: queryA 545:-------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG: 604 : *** * * * * ** ***** ** * ** * ** *: 8eti_J_1 330:FLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLD-LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG: 425 SecStr :HHHHTTTSEEEEEESSHHHHHHHHHHHHHTT EE-SSTTT HHHHHHHHHHHHH SSEEEEEEHHHHTTS SEEEESS S HHHHHHHH : ExpBur :eeeeeeebbbeebbebeebbebeeeebeeeeeeeee-ebeeeeeeebeebeeeeeeeeeeebbbbeeeebeeeeeebebeebeeeeeeeeeeeeeee: |