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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | I 1 (I) | polymer(polypeptide(L)) [451 aa] | ATP-dependent RNA helicase DbpA :DBPA_ECOLI | |
2 | b | Z 1 (I) | non-polymer(BEF) | BERYLLIUM TRIFLUORIDE ION | 48T 49G 52K 371E 578G 605R 608R (identity: 100.0 %/36.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7pli_I_1 identity=36.4% |
queryA 3:AFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA: 101 :*** * * * * * ** * ** * ** * ****** ** * * * : 7pli_I_1 5:AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ-----------------------------: 75 SecStr : GGGGS S HHHHHHHHHHT S HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHT TTS S -----------------------------: ExpBur :ebeebeebeeebeebbeeeeeeebeebbeebbebbbeeebbbbbbebbbebbbbbbbbbbeebeeeeeebb-----------------------------: Contact : bb b queryA 102:FAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG: 201 : : 7pli_I_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 202:HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ: 301 : ** * **** *: 7pli_I_1 75:--------------------------------------------------------------------------------------QALVLCPTRELADQ: 88 SecStr :-------------------------------------------------------------------------------------- EEEE SSHHHHHH: ExpBur :--------------------------------------------------------------------------------------bbbbbbbbebbbee: queryA 302:TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL: 401 : * * * ** * * * * ***** * * * ** **** * * ** * * : 7pli_I_1 89:VAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------ASR: 180 SecStr :HHHHHHHHGGGSTT E--EEE TTS HHHHHHHTTS SEEEE HHHHHHHHHHTS TT EEEETTHHHHTSHHHHHHHHHHHHTS ------SSS: ExpBur :bbebbeebbebeeebbb--bbbbbeeeeeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeeeeeebeebbeebe------eeb: Contact : b queryA 402:QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501 :* *** * * * * * * * * * * : 7pli_I_1 181:QTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----RLL: 238 SecStr :EEEEEES HH-HHHHGGGG SS EEEE S TT -----------SEEEEEEE STTHH-------------------------HHHH-----HHH: ExpBur :bbbbbbbbbeee-bbeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----ebb: queryA 502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601 : * ** ** ** * * **** * * * ** * * * ******* ** * * * **: 7pli_I_1 239:SLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVH: 329 SecStr :HHH SSEEEE SSHHHHHHHHHHHHHTTB--------- EEEE TTS HHHHHHHHHHHHTTS SEEEE GGGSSS TT EEEESS SSHHHHHH: ExpBur :beeebebbbbbbbeeeebeebbeebeeeeb---------ebbbbbeebebeebbbbbbebebebbbbbbbbebbbbbbebeebebbbbbbbbeebebbbb: Contact : b queryA 602:RIGRVGRAERMGLAISLVATEKEK: 625 :**** ** ***** * * : 7pli_I_1 330:RIGRTARAGNSGLAISFCAPEEAQ: 353 SecStr :HHTTSS TT EEEEEEE GGGHH: ExpBur :bbbbbbbeeeebbbbbbbbeebee: Contact : b b |